These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

330 related articles for article (PubMed ID: 19369496)

  • 1. Many-core algorithms for statistical phylogenetics.
    Suchard MA; Rambaut A
    Bioinformatics; 2009 Jun; 25(11):1370-6. PubMed ID: 19369496
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Many-core algorithms for high-dimensional gradients on phylogenetic trees.
    Gangavarapu K; Ji X; Baele G; Fourment M; Lemey P; Matsen FA; Suchard MA
    Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38243701
    [TBL] [Abstract][Full Text] [Related]  

  • 3. BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics.
    Ayres DL; Darling A; Zwickl DJ; Beerli P; Holder MT; Lewis PO; Huelsenbeck JP; Ronquist F; Swofford DL; Cummings MP; Rambaut A; Suchard MA
    Syst Biol; 2012 Jan; 61(1):170-3. PubMed ID: 21963610
    [TBL] [Abstract][Full Text] [Related]  

  • 4. High-Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE.
    Baele G; Ayres DL; Rambaut A; Suchard MA; Lemey P
    Methods Mol Biol; 2019; 1910():691-722. PubMed ID: 31278682
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Bayesian phylogenetics with BEAUti and the BEAST 1.7.
    Drummond AJ; Suchard MA; Xie D; Rambaut A
    Mol Biol Evol; 2012 Aug; 29(8):1969-73. PubMed ID: 22367748
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Bayesian Phylogenetic Analysis on Multi-Core Compute Architectures: Implementation and Evaluation of BEAGLE in RevBayes With MPI.
    Smith K; Ayres D; Neumaier R; Wörheide G; Höhna S
    Syst Biol; 2024 Jul; 73(2):455-469. PubMed ID: 38284268
    [TBL] [Abstract][Full Text] [Related]  

  • 7. BEAST: Bayesian evolutionary analysis by sampling trees.
    Drummond AJ; Rambaut A
    BMC Evol Biol; 2007 Nov; 7():214. PubMed ID: 17996036
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Many-core algorithms for high-dimensional gradients on phylogenetic trees.
    Gangavarapu K; Ji X; Baele G; Fourment M; Lemey P; Iv FAM; Suchard MA
    ArXiv; 2023 Mar; ():. PubMed ID: 36945693
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST.
    Baele G; Lemey P; Rambaut A; Suchard MA
    Bioinformatics; 2017 Jun; 33(12):1798-1805. PubMed ID: 28200071
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency.
    Baele G; Lemey P
    Bioinformatics; 2013 Aug; 29(16):1970-9. PubMed ID: 23766415
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes.
    Bielejec F; Baele G; Vrancken B; Suchard MA; Rambaut A; Lemey P
    Mol Biol Evol; 2016 Aug; 33(8):2167-9. PubMed ID: 27189542
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Inferring Trees.
    Whelan S; Morrison DA
    Methods Mol Biol; 2017; 1525():349-377. PubMed ID: 27896728
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Model averaging and Bayes factor calculation of relaxed molecular clocks in Bayesian phylogenetics.
    Li WL; Drummond AJ
    Mol Biol Evol; 2012 Feb; 29(2):751-61. PubMed ID: 21940644
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics.
    Dutheil J; Gaillard S; Bazin E; Glémin S; Ranwez V; Galtier N; Belkhir K
    BMC Bioinformatics; 2006 Apr; 7():188. PubMed ID: 16594991
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Markov-Modulated Continuous-Time Markov Chains to Identify Site- and Branch-Specific Evolutionary Variation in BEAST.
    Baele G; Gill MS; Bastide P; Lemey P; Suchard MA
    Syst Biol; 2021 Jan; 70(1):181-189. PubMed ID: 32415977
    [TBL] [Abstract][Full Text] [Related]  

  • 16. πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios.
    Bielejec F; Lemey P; Carvalho LM; Baele G; Rambaut A; Suchard MA
    BMC Bioinformatics; 2014 May; 15():133. PubMed ID: 24885610
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent.
    Wen D; Yu Y; Nakhleh L
    PLoS Genet; 2016 May; 12(5):e1006006. PubMed ID: 27144273
    [TBL] [Abstract][Full Text] [Related]  

  • 19. On the evolution rate in mammalian mitochondrial genomes.
    Hu G; Shen S; Wang K
    Comput Biol Chem; 2011 Jun; 35(3):137-42. PubMed ID: 21704259
    [TBL] [Abstract][Full Text] [Related]  

  • 20. CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models.
    Gil M; Zanetti MS; Zoller S; Anisimova M
    Mol Biol Evol; 2013 Jun; 30(6):1270-80. PubMed ID: 23436912
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.