196 related articles for article (PubMed ID: 19369500)
1. PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots.
Byun Y; Han K
Bioinformatics; 2009 Jun; 25(11):1435-7. PubMed ID: 19369500
[TBL] [Abstract][Full Text] [Related]
2. PseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structures.
Byun Y; Han K
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W416-22. PubMed ID: 16845039
[TBL] [Abstract][Full Text] [Related]
3. PSEUDOVIEWER2: Visualization of RNA pseudoknots of any type.
Han K; Byun Y
Nucleic Acids Res; 2003 Jul; 31(13):3432-40. PubMed ID: 12824341
[TBL] [Abstract][Full Text] [Related]
4. PseudoViewer: automatic visualization of RNA pseudoknots.
Han K; Lee Y; Kim W
Bioinformatics; 2002; 18 Suppl 1():S321-8. PubMed ID: 12169562
[TBL] [Abstract][Full Text] [Related]
5. pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows.
Reeder J; Steffen P; Giegerich R
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W320-4. PubMed ID: 17478505
[TBL] [Abstract][Full Text] [Related]
6. FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.
Chen X; He SM; Bu D; Zhang F; Wang Z; Chen R; Gao W
Bioinformatics; 2008 Sep; 24(18):1994-2001. PubMed ID: 18586700
[TBL] [Abstract][Full Text] [Related]
7. An RNA folding algorithm including pseudoknots based on dynamic weighted matching.
Liu H; Xu D; Shao J; Wang Y
Comput Biol Chem; 2006 Feb; 30(1):72-6. PubMed ID: 16321572
[TBL] [Abstract][Full Text] [Related]
8. [Predicting RNA secondary structures including pseudoknots by covariance with stacking and minimum free energy].
Yang J; Luo Z; Fang X; Wang J; Tang K
Sheng Wu Gong Cheng Xue Bao; 2008 Apr; 24(4):659-64. PubMed ID: 18616179
[TBL] [Abstract][Full Text] [Related]
9. Prediction of RNA secondary structure by free energy minimization.
Mathews DH; Turner DH
Curr Opin Struct Biol; 2006 Jun; 16(3):270-8. PubMed ID: 16713706
[TBL] [Abstract][Full Text] [Related]
10. A partition function algorithm for nucleic acid secondary structure including pseudoknots.
Dirks RM; Pierce NA
J Comput Chem; 2003 Oct; 24(13):1664-77. PubMed ID: 12926009
[TBL] [Abstract][Full Text] [Related]
11. RNA Movies 2: sequential animation of RNA secondary structures.
Kaiser A; Krüger J; Evers DJ
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W330-4. PubMed ID: 17567618
[TBL] [Abstract][Full Text] [Related]
12. Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics.
Reeder J; Giegerich R
BMC Bioinformatics; 2004 Aug; 5():104. PubMed ID: 15294028
[TBL] [Abstract][Full Text] [Related]
13. WebInterViewer: visualizing and analyzing molecular interaction networks.
Han K; Ju BH; Jung H
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W89-95. PubMed ID: 15215357
[TBL] [Abstract][Full Text] [Related]
14. Combinatorics of RNA structures with pseudoknots.
Jin EY; Qin J; Reidys CM
Bull Math Biol; 2008 Jan; 70(1):45-67. PubMed ID: 17896159
[TBL] [Abstract][Full Text] [Related]
15. New developments in structure determination of pseudoknots.
Hilbers CW; Michiels PJ; Heus HA
Biopolymers; 1998; 48(2-3):137-53. PubMed ID: 10333742
[TBL] [Abstract][Full Text] [Related]
16. RNA pseudoknot prediction in energy-based models.
Lyngsø RB; Pedersen CN
J Comput Biol; 2000; 7(3-4):409-27. PubMed ID: 11108471
[TBL] [Abstract][Full Text] [Related]
17. RNA structure alignment by a unit-vector approach.
Capriotti E; Marti-Renom MA
Bioinformatics; 2008 Aug; 24(16):i112-8. PubMed ID: 18689811
[TBL] [Abstract][Full Text] [Related]
18. Prediction of RNA pseudoknots using heuristic modeling with mapping and sequential folding.
Dawson WK; Fujiwara K; Kawai G
PLoS One; 2007 Sep; 2(9):e905. PubMed ID: 17878940
[TBL] [Abstract][Full Text] [Related]
19. Asymptotic enumeration of RNA structures with pseudoknots.
Jin EY; Reidys CM
Bull Math Biol; 2008 May; 70(4):951-70. PubMed ID: 18340497
[TBL] [Abstract][Full Text] [Related]
20. Predicting RNA secondary structures with arbitrary pseudoknots by maximizing the number of stacking pairs.
Ieong S; Kao MY; Lam TW; Sung WK; Yiu SM
J Comput Biol; 2003; 10(6):981-95. PubMed ID: 14980021
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
