These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

120 related articles for article (PubMed ID: 19377977)

  • 1. Structural probing techniques on natural aptamers.
    Wakeman CA; Winkler WC
    Methods Mol Biol; 2009; 535():115-33. PubMed ID: 19377977
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Analysis of the RNA backbone: structural analysis of riboswitches by in-line probing and selective 2'-hydroxyl acylation and primer extension.
    Wakeman CA; Winkler WC
    Methods Mol Biol; 2009; 540():173-91. PubMed ID: 19381560
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Probing RNA folding by hydroxyl radical footprinting.
    Costa M; Monachello D
    Methods Mol Biol; 2014; 1086():119-42. PubMed ID: 24136601
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Hydroxyl-radical footprinting to probe equilibrium changes in RNA tertiary structure.
    Shcherbakova I; Mitra S
    Methods Enzymol; 2009; 468():31-46. PubMed ID: 20946763
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks.
    Butcher SE; Pyle AM
    Acc Chem Res; 2011 Dec; 44(12):1302-11. PubMed ID: 21899297
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Probing RNA structures with hydroxyl radicals.
    Celander DW
    Curr Protoc Nucleic Acid Chem; 2001 May; Chapter 6():Unit 6.5. PubMed ID: 18428866
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Mapping nucleic acid structure by hydroxyl radical cleavage.
    Tullius TD; Greenbaum JA
    Curr Opin Chem Biol; 2005 Apr; 9(2):127-34. PubMed ID: 15811796
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Use of SHAPE to select 2AP substitution sites for RNA-ligand interactions and dynamics studies.
    Soulière MF; Micura R
    Methods Mol Biol; 2014; 1103():227-39. PubMed ID: 24318898
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Monitoring structural changes in nucleic acids with single residue spatial and millisecond time resolution by quantitative hydroxyl radical footprinting.
    Shcherbakova I; Brenowitz M
    Nat Protoc; 2008; 3(2):288-302. PubMed ID: 18274531
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Time-Resolved Hydroxyl Radical Footprinting of RNA with X-Rays.
    Hao Y; Bohon J; Hulscher R; Rappé MC; Gupta S; Adilakshmi T; Woodson SA
    Curr Protoc Nucleic Acid Chem; 2018 Jun; 73(1):e52. PubMed ID: 29927103
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Structural methods for studying IRES function.
    Kieft JS; Costantino DA; Filbin ME; Hammond J; Pfingsten JS
    Methods Enzymol; 2007; 430():333-71. PubMed ID: 17913644
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A powerful approach for the selection of 2-aminopurine substitution sites to investigate RNA folding.
    Soulière MF; Haller A; Rieder R; Micura R
    J Am Chem Soc; 2011 Oct; 133(40):16161-7. PubMed ID: 21882876
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Probing RNA structure within living cells.
    Liebeg A; Waldsich C
    Methods Enzymol; 2009; 468():219-38. PubMed ID: 20946772
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Productive folding to the native state by a group II intron ribozyme.
    Swisher JF; Su LJ; Brenowitz M; Anderson VE; Pyle AM
    J Mol Biol; 2002 Jan; 315(3):297-310. PubMed ID: 11786013
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Structural analysis of RNA backbone using in-line probing.
    Nahvi A; Green R
    Methods Enzymol; 2013; 530():381-97. PubMed ID: 24034334
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding.
    Sclavi B; Woodson S; Sullivan M; Chance MR; Brenowitz M
    J Mol Biol; 1997 Feb; 266(1):144-59. PubMed ID: 9054977
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Monitoring equilibrium changes in RNA structure by 'peroxidative' and 'oxidative' hydroxyl radical footprinting.
    Bachu R; Padlan FC; Rouhanifard S; Brenowitz M; Schlatterer JC
    J Vis Exp; 2011 Oct; (56):e3244. PubMed ID: 22025107
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The RNA binding site of S8 ribosomal protein of Escherichia coli: Selex and hydroxyl radical probing studies.
    Moine H; Cachia C; Westhof E; Ehresmann B; Ehresmann C
    RNA; 1997 Mar; 3(3):255-68. PubMed ID: 9056763
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An algorithm for searching RNA motifs in genomic sequences.
    Liu J; Ma B; Zhang K
    Biomol Eng; 2007 Sep; 24(3):343-50. PubMed ID: 17482512
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution.
    Wilkinson KA; Merino EJ; Weeks KM
    Nat Protoc; 2006; 1(3):1610-6. PubMed ID: 17406453
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.