245 related articles for article (PubMed ID: 19378138)
1. Gene orthology assessment with OrthologID.
Egan M; Lee EK; Chiu JC; Coruzzi G; Desalle R
Methods Mol Biol; 2009; 537():23-38. PubMed ID: 19378138
[TBL] [Abstract][Full Text] [Related]
2. OrthologID: automation of genome-scale ortholog identification within a parsimony framework.
Chiu JC; Lee EK; Egan MG; Sarkar IN; Coruzzi GM; DeSalle R
Bioinformatics; 2006 Mar; 22(6):699-707. PubMed ID: 16410324
[TBL] [Abstract][Full Text] [Related]
3. A whole-genome phylogeny of the family Pasteurellaceae.
Bonaventura MP; Lee EK; Desalle R; Planet PJ
Mol Phylogenet Evol; 2010 Mar; 54(3):950-6. PubMed ID: 19686857
[TBL] [Abstract][Full Text] [Related]
4. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
Bininda-Emonds OR
BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
[TBL] [Abstract][Full Text] [Related]
5. SMART 4.0: towards genomic data integration.
Letunic I; Copley RR; Schmidt S; Ciccarelli FD; Doerks T; Schultz J; Ponting CP; Bork P
Nucleic Acids Res; 2004 Jan; 32(Database issue):D142-4. PubMed ID: 14681379
[TBL] [Abstract][Full Text] [Related]
6. PhyloPat: phylogenetic pattern analysis of eukaryotic genes.
Hulsen T; de Vlieg J; Groenen PM
BMC Bioinformatics; 2006 Sep; 7():398. PubMed ID: 16948844
[TBL] [Abstract][Full Text] [Related]
7. PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.
Hanekamp K; Bohnebeck U; Beszteri B; Valentin K
Bioinformatics; 2007 Apr; 23(7):793-801. PubMed ID: 17332025
[TBL] [Abstract][Full Text] [Related]
8. Automatic identification of large collections of protein-coding or rRNA sequences.
Arigon AM; Perrière G; Gouy M
Biochimie; 2008 Apr; 90(4):609-14. PubMed ID: 17920750
[TBL] [Abstract][Full Text] [Related]
9. HoSeqI: automated homologous sequence identification in gene family databases.
Arigon AM; Perrière G; Gouy M
Bioinformatics; 2006 Jul; 22(14):1786-7. PubMed ID: 16682422
[TBL] [Abstract][Full Text] [Related]
10. GeneTools--application for functional annotation and statistical hypothesis testing.
Beisvag V; Jünge FK; Bergum H; Jølsum L; Lydersen S; Günther CC; Ramampiaro H; Langaas M; Sandvik AK; Laegreid A
BMC Bioinformatics; 2006 Oct; 7():470. PubMed ID: 17062145
[TBL] [Abstract][Full Text] [Related]
11. MultiPhyl: a high-throughput phylogenomics webserver using distributed computing.
Keane TM; Naughton TJ; McInerney JO
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W33-7. PubMed ID: 17553837
[TBL] [Abstract][Full Text] [Related]
12. GenomeBlast: a web tool for small genome comparison.
Lu G; Jiang L; Helikar RM; Rowley TW; Zhang L; Chen X; Moriyama EN
BMC Bioinformatics; 2006 Dec; 7 Suppl 4(Suppl 4):S18. PubMed ID: 17217510
[TBL] [Abstract][Full Text] [Related]
13. On the quality of tree-based protein classification.
Lazareva-Ulitsky B; Diemer K; Thomas PD
Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
[TBL] [Abstract][Full Text] [Related]
14. COPid: composition based protein identification.
Kumar M; Thakur V; Raghava GP
In Silico Biol; 2008; 8(2):121-8. PubMed ID: 18928200
[TBL] [Abstract][Full Text] [Related]
15. GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.
Besemer J; Borodovsky M
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W451-4. PubMed ID: 15980510
[TBL] [Abstract][Full Text] [Related]
16. YASS: enhancing the sensitivity of DNA similarity search.
Noé L; Kucherov G
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W540-3. PubMed ID: 15980530
[TBL] [Abstract][Full Text] [Related]
17. Assessment of phylogenomic and orthology approaches for phylogenetic inference.
Dutilh BE; van Noort V; van der Heijden RT; Boekhout T; Snel B; Huynen MA
Bioinformatics; 2007 Apr; 23(7):815-24. PubMed ID: 17237036
[TBL] [Abstract][Full Text] [Related]
18. Accurate identification of orthologous segments among multiple genomes.
Hachiya T; Osana Y; Popendorf K; Sakakibara Y
Bioinformatics; 2009 Apr; 25(7):853-60. PubMed ID: 19188192
[TBL] [Abstract][Full Text] [Related]
19. SWeBLAST: a Sliding Window Web-based BLAST tool for recombinant analysis.
Fourment M; Gibbs AJ; Gibbs MJ
J Virol Methods; 2008 Sep; 152(1-2):98-101. PubMed ID: 18602951
[TBL] [Abstract][Full Text] [Related]
20. POWER: PhylOgenetic WEb Repeater--an integrated and user-optimized framework for biomolecular phylogenetic analysis.
Lin CY; Lin FK; Lin CH; Lai LW; Hsu HJ; Chen SH; Hsiung CA
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W553-6. PubMed ID: 15980533
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
