1589 related articles for article (PubMed ID: 19379703)
1. Preparation of genome-wide DNA fragment libraries using bisulfite in polyacrylamide gel electrophoresis slices with formamide denaturation and quality control for massively parallel sequencing by oligonucleotide ligation and detection.
Ranade SS; Chung CB; Zon G; Boyd VL
Anal Biochem; 2009 Jul; 390(2):126-35. PubMed ID: 19379703
[TBL] [Abstract][Full Text] [Related]
2. Formamide as a denaturant for bisulfite conversion of genomic DNA: Bisulfite sequencing of the GSTPi and RARbeta2 genes of 43 formalin-fixed paraffin-embedded prostate cancer specimens.
Zon G; Barker MA; Kaur P; Groshen S; Jones LW; Imam SA; Boyd VL
Anal Biochem; 2009 Sep; 392(2):117-25. PubMed ID: 19505431
[TBL] [Abstract][Full Text] [Related]
3. Methylation-dependent fragment separation: direct detection of DNA methylation by capillary electrophoresis of PCR products from bisulfite-converted genomic DNA.
Boyd VL; Moody KI; Karger AE; Livak KJ; Zon G; Burns JW
Anal Biochem; 2006 Jul; 354(2):266-73. PubMed ID: 16725101
[TBL] [Abstract][Full Text] [Related]
4. DNA methylation analysis by bisulfite conversion, cloning, and sequencing of individual clones.
Zhang Y; Rohde C; Tierling S; Stamerjohanns H; Reinhardt R; Walter J; Jeltsch A
Methods Mol Biol; 2009; 507():177-87. PubMed ID: 18987815
[TBL] [Abstract][Full Text] [Related]
5. Single-molecule polymerase chain reaction reduces bias: application to DNA methylation analysis by bisulfite sequencing.
Chhibber A; Schroeder BG
Anal Biochem; 2008 Jun; 377(1):46-54. PubMed ID: 18358818
[TBL] [Abstract][Full Text] [Related]
6. Does urea promote the bisulfite-mediated deamination of cytosine in DNA? Investigation aiming at speeding-up the procedure for DNA methylation analysis.
Hayatsu H; Tsuji K; Negishi K
Nucleic Acids Symp Ser (Oxf); 2006; (50):69-70. PubMed ID: 17150821
[TBL] [Abstract][Full Text] [Related]
7. Methylation profiling using degenerated oligonucleotide primer-PCR specific for genome-wide amplification of bisulfite-modified DNA.
Yang WH; Wu JR; Wang TH; Au LC
Anal Biochem; 2007 Oct; 369(1):120-7. PubMed ID: 17663982
[TBL] [Abstract][Full Text] [Related]
8. Limitations and advantages of MS-HRM and bisulfite sequencing for single locus methylation studies.
Wojdacz TK; Møller TH; Thestrup BB; Kristensen LS; Hansen LL
Expert Rev Mol Diagn; 2010 Jul; 10(5):575-80. PubMed ID: 20629507
[TBL] [Abstract][Full Text] [Related]
9. Investigation of genomic methylation status using methylation-specific and bisulfite sequencing polymerase chain reaction.
Carless M
Methods Mol Biol; 2009; 523():217-34. PubMed ID: 19381936
[TBL] [Abstract][Full Text] [Related]
10. Profiling DNA methylation from small amounts of genomic DNA starting material: efficient sodium bisulfite conversion and subsequent whole-genome amplification.
Mill J; Petronis A
Methods Mol Biol; 2009; 507():371-81. PubMed ID: 18987828
[TBL] [Abstract][Full Text] [Related]
11. The bisulfite genomic sequencing used in the analysis of epigenetic states, a technique in the emerging environmental genotoxicology research.
Hayatsu H
Mutat Res; 2008; 659(1-2):77-82. PubMed ID: 18485805
[TBL] [Abstract][Full Text] [Related]
12. Capillary electrophoretic analysis of methylation status in CpG-rich regions by single-base extension of primers modified with N6-methoxy-2,6-diaminopurine.
Boyd VL; Zon G
Anal Biochem; 2008 Sep; 380(1):13-20. PubMed ID: 18539128
[TBL] [Abstract][Full Text] [Related]
13. Chemistry of bisulfite genomic sequencing; advances and issues.
Hayatsu H; Negishi K; Shiraishi M; Tsuji K; Moriyama K
Nucleic Acids Symp Ser (Oxf); 2007; (51):47-8. PubMed ID: 18029579
[TBL] [Abstract][Full Text] [Related]
14. Accelerated bisulfite-deamination of cytosine in the genomic sequencing procedure for DNA methylation analysis.
Hayatsu H; Negishi K; Shiraishi M
Nucleic Acids Symp Ser (Oxf); 2004; (48):261-2. PubMed ID: 17150578
[TBL] [Abstract][Full Text] [Related]
15. Whole methylome analysis by ultra-deep sequencing using two-base encoding.
Bormann Chung CA; Boyd VL; McKernan KJ; Fu Y; Monighetti C; Peckham HE; Barker M
PLoS One; 2010 Feb; 5(2):e9320. PubMed ID: 20179767
[TBL] [Abstract][Full Text] [Related]
16. A new method for accurate assessment of DNA quality after bisulfite treatment.
Ehrich M; Zoll S; Sur S; van den Boom D
Nucleic Acids Res; 2007; 35(5):e29. PubMed ID: 17259213
[TBL] [Abstract][Full Text] [Related]
17. Methylation-sensitive single-nucleotide primer extension (Ms-SNuPE) for quantitative measurement of DNA methylation.
Gonzalgo ML; Liang G
Nat Protoc; 2007; 2(8):1931-6. PubMed ID: 17703204
[TBL] [Abstract][Full Text] [Related]
18. DNA methylation analysis of germ cells by using bisulfite-based sequencing methods.
Kobayashi H; Kono T
Methods Mol Biol; 2012; 825():223-35. PubMed ID: 22144248
[TBL] [Abstract][Full Text] [Related]
19. Genome-wide high throughput analysis of DNA methylation in eukaryotes.
Pomraning KR; Smith KM; Freitag M
Methods; 2009 Mar; 47(3):142-50. PubMed ID: 18950712
[TBL] [Abstract][Full Text] [Related]
20. MethylQuant: a real-time PCR-based method to quantify DNA methylation at single specific cytosines.
Dugast-Darzacq C; Grange T
Methods Mol Biol; 2009; 507():281-303. PubMed ID: 18987822
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
