These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
26. Modeling of gene regulatory network dynamics using threshold logic. Gowda T; Vrudhula S; Kim S Ann N Y Acad Sci; 2009 Mar; 1158():71-81. PubMed ID: 19348633 [TBL] [Abstract][Full Text] [Related]
27. [Genomics in the understanding of the mechanisms of transcriptional regulation]. Vandenbunder B Bull Cancer; 2001 Mar; 88(3):253-60. PubMed ID: 11313202 [TBL] [Abstract][Full Text] [Related]
28. Metabolome, transcriptome, and bioinformatic cis-element analyses point to HNF-4 as a central regulator of gene expression during enterocyte differentiation. Stegmann A; Hansen M; Wang Y; Larsen JB; Lund LR; Ritié L; Nicholson JK; Quistorff B; Simon-Assmann P; Troelsen JT; Olsen J Physiol Genomics; 2006 Oct; 27(2):141-55. PubMed ID: 16868071 [TBL] [Abstract][Full Text] [Related]
30. Direct Response Analysis in cellular signalling networks. Shayeghi N; Ng T; Coolen AC J Theor Biol; 2012 Jul; 304():219-25. PubMed ID: 22554953 [TBL] [Abstract][Full Text] [Related]
31. Entropy of a network ensemble: definitions and applications to genomic data. Menichetti G; Remondini D Theor Biol Forum; 2014; 107(1-2):77-87. PubMed ID: 25936214 [TBL] [Abstract][Full Text] [Related]
32. The Inferelator 2.0: a scalable framework for reconstruction of dynamic regulatory network models. Madar A; Greenfield A; Ostrer H; Vanden-Eijnden E; Bonneau R Annu Int Conf IEEE Eng Med Biol Soc; 2009; 2009():5448-51. PubMed ID: 19964678 [TBL] [Abstract][Full Text] [Related]
33. Systems biology approaches to defining transcription regulatory networks in halophilic archaea. Darnell CL; Schmid AK Methods; 2015 Sep; 86():102-14. PubMed ID: 25976837 [TBL] [Abstract][Full Text] [Related]
34. From genomes to functions in aquatic biology. Nikinmaa M; Rytkönen KT Mar Genomics; 2012 Mar; 5():1-6. PubMed ID: 22325716 [TBL] [Abstract][Full Text] [Related]
35. Methods to reconstruct and compare transcriptional regulatory networks. Babu MM; Lang B; Aravind L Methods Mol Biol; 2009; 541():163-80. PubMed ID: 19381525 [TBL] [Abstract][Full Text] [Related]
36. Assessing modularity using a random matrix theory approach. Feher K; Whelan J; Müller S Stat Appl Genet Mol Biol; 2011 Sep; 10(1):. PubMed ID: 23089818 [TBL] [Abstract][Full Text] [Related]
37. Derivation of large-scale cellular regulatory networks from biological time series data. de Bivort BL Methods Mol Biol; 2010; 662():149-65. PubMed ID: 20824470 [TBL] [Abstract][Full Text] [Related]
38. Imputing missing values for genetic interaction data. Wang Y; Wang L; Yang D; Deng M Methods; 2014 Jun; 67(3):269-77. PubMed ID: 24718098 [TBL] [Abstract][Full Text] [Related]
39. High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0. Skok Gibbs C; Jackson CA; Saldi GA; Tjärnberg A; Shah A; Watters A; De Veaux N; Tchourine K; Yi R; Hamamsy T; Castro DM; Carriero N; Gorissen BL; Gresham D; Miraldi ER; Bonneau R Bioinformatics; 2022 Apr; 38(9):2519-2528. PubMed ID: 35188184 [TBL] [Abstract][Full Text] [Related]
40. Epistasis--the essential role of gene interactions in the structure and evolution of genetic systems. Phillips PC Nat Rev Genet; 2008 Nov; 9(11):855-67. PubMed ID: 18852697 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]