317 related articles for article (PubMed ID: 19385698)
1. Binding regularities in complexes of transcription factors with operator DNA: homeodomain family.
Chirgadze YN; Zheltukhin EI; Polozov RV; Sivozhelezov VS; Ivanov VV
J Biomol Struct Dyn; 2009 Jun; 26(6):687-700. PubMed ID: 19385698
[TBL] [Abstract][Full Text] [Related]
2. Solution structure of the K50 class homeodomain PITX2 bound to DNA and implications for mutations that cause Rieger syndrome.
Chaney BA; Clark-Baldwin K; Dave V; Ma J; Rance M
Biochemistry; 2005 May; 44(20):7497-511. PubMed ID: 15895993
[TBL] [Abstract][Full Text] [Related]
3. Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: determinants of affinity and sequence specificity.
Wuttke DS; Foster MP; Case DA; Gottesfeld JM; Wright PE
J Mol Biol; 1997 Oct; 273(1):183-206. PubMed ID: 9367756
[TBL] [Abstract][Full Text] [Related]
4. Recognition rules for binding of homeodomains to operator DNA.
Chirgadze YN; Sivozhelezov VS; Polozov RV; Stepanenko VA; Ivanov VV
J Biomol Struct Dyn; 2012; 29(4):715-31. PubMed ID: 22208274
[TBL] [Abstract][Full Text] [Related]
5. Homeodomain proteins: what governs their ability to recognize specific DNA sequences?
Draganescu A; Levin JR; Tullius TD
J Mol Biol; 1995 Jul; 250(5):595-608. PubMed ID: 7623378
[TBL] [Abstract][Full Text] [Related]
6. Insights into nonspecific binding of homeodomains from a structure of MATalpha2 bound to DNA.
Aishima J; Wolberger C
Proteins; 2003 Jun; 51(4):544-51. PubMed ID: 12784213
[TBL] [Abstract][Full Text] [Related]
7. Positively charged residues at the N-terminal arm of the homeodomain are required for efficient DNA binding by homeodomain-leucine zipper proteins.
Palena CM; Tron AE; Bertoncini CW; Gonzalez DH; Chan RL
J Mol Biol; 2001 Apr; 308(1):39-47. PubMed ID: 11302705
[TBL] [Abstract][Full Text] [Related]
8. Interactions of the vnd/NK-2 homeodomain with DNA by nuclear magnetic resonance spectroscopy: basis of binding specificity.
Gruschus JM; Tsao DH; Wang LH; Nirenberg M; Ferretti JA
Biochemistry; 1997 May; 36(18):5372-80. PubMed ID: 9154919
[TBL] [Abstract][Full Text] [Related]
9. Recognition rules for binding of Zn-Cys2His2 transcription factors to operator DNA.
Polozov RV; Sivozhelezov VS; Chirgadze YN; Ivanov VV
J Biomol Struct Dyn; 2015; 33(2):253-66. PubMed ID: 24460547
[TBL] [Abstract][Full Text] [Related]
10. Forces driving the binding of homeodomains to DNA.
Dragan AI; Li Z; Makeyeva EN; Milgotina EI; Liu Y; Crane-Robinson C; Privalov PL
Biochemistry; 2006 Jan; 45(1):141-51. PubMed ID: 16388589
[TBL] [Abstract][Full Text] [Related]
11. DNA-induced alpha-helix capping in conserved linker sequences is a determinant of binding affinity in Cys(2)-His(2) zinc fingers.
Laity JH; Dyson HJ; Wright PE
J Mol Biol; 2000 Jan; 295(4):719-27. PubMed ID: 10656784
[TBL] [Abstract][Full Text] [Related]
12. Contribution of cation-pi interactions to the stability of protein-DNA complexes.
Wintjens R; Liévin J; Rooman M; Buisine E
J Mol Biol; 2000 Sep; 302(2):395-410. PubMed ID: 10970741
[TBL] [Abstract][Full Text] [Related]
13. The NMR solution structure of a mutant of the Max b/HLH/LZ free of DNA: insights into the specific and reversible DNA binding mechanism of dimeric transcription factors.
Sauvé S; Tremblay L; Lavigne P
J Mol Biol; 2004 Sep; 342(3):813-32. PubMed ID: 15342239
[TBL] [Abstract][Full Text] [Related]
14. Major groove recognition by three-stranded beta-sheets: affinity determinants and conserved structural features.
Connolly KM; Ilangovan U; Wojciak JM; Iwahara M; Clubb RT
J Mol Biol; 2000 Jul; 300(4):841-56. PubMed ID: 10891272
[TBL] [Abstract][Full Text] [Related]
15. Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition.
Miller JC; Pabo CO
J Mol Biol; 2001 Oct; 313(2):309-15. PubMed ID: 11800559
[TBL] [Abstract][Full Text] [Related]
16. Crystal structure of the human LRH-1 DBD-DNA complex reveals Ftz-F1 domain positioning is required for receptor activity.
Solomon IH; Hager JM; Safi R; McDonnell DP; Redinbo MR; Ortlund EA
J Mol Biol; 2005 Dec; 354(5):1091-102. PubMed ID: 16289203
[TBL] [Abstract][Full Text] [Related]
17. The role of lysine 55 in determining the specificity of the purine repressor for its operators through minor groove interactions.
Glasfeld A; Koehler AN; Schumacher MA; Brennan RG
J Mol Biol; 1999 Aug; 291(2):347-61. PubMed ID: 10438625
[TBL] [Abstract][Full Text] [Related]
18. Effect of CpG methylation on DNA binding protein: molecular dynamics simulations of the homeodomain PITX2 bound to the methylated DNA.
Yang SY; Yang XL; Yao LF; Wang HB; Sun CK
J Mol Graph Model; 2011 Jun; 29(7):920-7. PubMed ID: 21498098
[TBL] [Abstract][Full Text] [Related]
19. The arginine repressor of Escherichia coli K-12 makes direct contacts to minor and major groove determinants of the operators.
Wang H; Glansdorff N; Charlier D
J Mol Biol; 1998 Apr; 277(4):805-24. PubMed ID: 9545374
[TBL] [Abstract][Full Text] [Related]
20. Homology modeling based solution structure of Hoxc8-DNA complex: role of context bases outside TAAT stretch.
Roy S; Sen S
J Biomol Struct Dyn; 2005 Jun; 22(6):707-18. PubMed ID: 15842175
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
