67 related articles for article (PubMed ID: 19389734)
1. MetaTISA: Metagenomic Translation Initiation Site Annotator for improving gene start prediction.
Hu GQ; Guo JT; Liu YC; Zhu H
Bioinformatics; 2009 Jul; 25(14):1843-5. PubMed ID: 19389734
[TBL] [Abstract][Full Text] [Related]
2. Prediction of translation initiation site for microbial genomes with TriTISA.
Hu GQ; Zheng X; Zhu HQ; She ZS
Bioinformatics; 2009 Jan; 25(1):123-5. PubMed ID: 19015130
[TBL] [Abstract][Full Text] [Related]
3. TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites.
Tech M; Morgenstern B; Meinicke P
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W588-90. PubMed ID: 16845076
[TBL] [Abstract][Full Text] [Related]
4. TICO: a tool for improving predictions of prokaryotic translation initiation sites.
Tech M; Pfeifer N; Morgenstern B; Meinicke P
Bioinformatics; 2005 Sep; 21(17):3568-9. PubMed ID: 15994191
[TBL] [Abstract][Full Text] [Related]
5. TITER: predicting translation initiation sites by deep learning.
Zhang S; Hu H; Jiang T; Zhang L; Zeng J
Bioinformatics; 2017 Jul; 33(14):i234-i242. PubMed ID: 28881981
[TBL] [Abstract][Full Text] [Related]
6. Gene prediction in metagenomic fragments based on the SVM algorithm.
Liu Y; Guo J; Hu G; Zhu H
BMC Bioinformatics; 2013; 14 Suppl 5(Suppl 5):S12. PubMed ID: 23735199
[TBL] [Abstract][Full Text] [Related]
7. MetWAMer: eukaryotic translation initiation site prediction.
Sparks ME; Brendel V
BMC Bioinformatics; 2008 Sep; 9():381. PubMed ID: 18801175
[TBL] [Abstract][Full Text] [Related]
8. Accuracy improvement for identifying translation initiation sites in microbial genomes.
Zhu HQ; Hu GQ; Ouyang ZQ; Wang J; She ZS
Bioinformatics; 2004 Dec; 20(18):3308-17. PubMed ID: 15247104
[TBL] [Abstract][Full Text] [Related]
9. Dragon TIS Spotter: an Arabidopsis-derived predictor of translation initiation sites in plants.
Magana-Mora A; Ashoor H; Jankovic BR; Kamau A; Awara K; Chowdhary R; Archer JA; Bajic VB
Bioinformatics; 2013 Jan; 29(1):117-8. PubMed ID: 23110968
[TBL] [Abstract][Full Text] [Related]
10. ProTISA: a comprehensive resource for translation initiation site annotation in prokaryotic genomes.
Hu GQ; Zheng X; Yang YF; Ortet P; She ZS; Zhu H
Nucleic Acids Res; 2008 Jan; 36(Database issue):D114-9. PubMed ID: 17942412
[TBL] [Abstract][Full Text] [Related]
11. Gene and translation initiation site prediction in metagenomic sequences.
Hyatt D; LoCascio PF; Hauser LJ; Uberbacher EC
Bioinformatics; 2012 Sep; 28(17):2223-30. PubMed ID: 22796954
[TBL] [Abstract][Full Text] [Related]
12. iTIS-PseTNC: a sequence-based predictor for identifying translation initiation site in human genes using pseudo trinucleotide composition.
Chen W; Feng PM; Deng EZ; Lin H; Chou KC
Anal Biochem; 2014 Oct; 462():76-83. PubMed ID: 25016190
[TBL] [Abstract][Full Text] [Related]
13. iTIS-PseKNC: Identification of Translation Initiation Site in human genes using pseudo k-tuple nucleotides composition.
Kabir M; Iqbal M; Ahmad S; Hayat M
Comput Biol Med; 2015 Nov; 66():252-7. PubMed ID: 26433457
[TBL] [Abstract][Full Text] [Related]
14. Prediction of translation initiation sites in human mRNA sequences with AUG start codon in weak Kozak context: A neural network approach.
Tikole S; Sankararamakrishnan R
Biochem Biophys Res Commun; 2008 May; 369(4):1166-8. PubMed ID: 18342624
[TBL] [Abstract][Full Text] [Related]
15. PlasmoGF: an integrated system for comparative genomics and phylogenetic analysis of Plasmodium gene families.
Xu X; Wu J; Xiao J; Tan Y; Bao Q; Zhao F; Li X
Bioinformatics; 2008 May; 24(9):1217-20. PubMed ID: 18337260
[TBL] [Abstract][Full Text] [Related]
16. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
Zhang DL; Ji L; Li YD
Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
[TBL] [Abstract][Full Text] [Related]
17. TISs-ST: a web server to evaluate polymorphic translation initiation sites and their reflections on the secretory targets.
Vicentini R; Menossi M
BMC Bioinformatics; 2007 May; 8():160. PubMed ID: 17517132
[TBL] [Abstract][Full Text] [Related]
18. Recognition of translation initiation sites of eukaryotic genes based on an EM algorithm.
Wang Y; Ou H; Guo F
J Comput Biol; 2003; 10(5):699-708. PubMed ID: 14633394
[TBL] [Abstract][Full Text] [Related]
19. DAMBE6: New Tools for Microbial Genomics, Phylogenetics, and Molecular Evolution.
Xia X
J Hered; 2017 Jun; 108(4):431-437. PubMed ID: 28379490
[TBL] [Abstract][Full Text] [Related]
20. SmashCommunity: a metagenomic annotation and analysis tool.
Arumugam M; Harrington ED; Foerstner KU; Raes J; Bork P
Bioinformatics; 2010 Dec; 26(23):2977-8. PubMed ID: 20959381
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]