These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

142 related articles for article (PubMed ID: 19399431)

  • 1. Modeling molecular regulatory networks with JigCell and PET.
    Shaffer CA; Zwolak JW; Randhawa R; Tyson JJ
    Methods Mol Biol; 2009; 500():81-111. PubMed ID: 19399431
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Modeling regulatory networks at Virginia Tech.
    Allen NA; Calzone L; Chen KC; Ciliberto A; Ramakrishnan N; Shaffer CA; Sible JC; Tyson JJ; Vass MT; Watson LT; Zwolak JW
    OMICS; 2003; 7(3):285-99. PubMed ID: 14583117
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Model aggregation: a building-block approach to creating large macromolecular regulatory networks.
    Randhawa R; Shaffer CA; Tyson JJ
    Bioinformatics; 2009 Dec; 25(24):3289-95. PubMed ID: 19880372
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Ingeneue: a software tool to simulate and explore genetic regulatory networks.
    Kim KJ
    Methods Mol Biol; 2009; 500():169-200. PubMed ID: 19399429
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Mathematical modeling as a tool for investigating cell cycle control networks.
    Sible JC; Tyson JJ
    Methods; 2007 Feb; 41(2):238-47. PubMed ID: 17189866
    [TBL] [Abstract][Full Text] [Related]  

  • 6. the JigCell model builder and run manager.
    Vass M; Allen N; Shaffer CA; Ramakrishnan N; Watson LT; Tyson JJ
    Bioinformatics; 2004 Dec; 20(18):3680-1. PubMed ID: 15273159
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Leveraging modeling approaches: reaction networks and rules.
    Blinov ML; Moraru II
    Adv Exp Med Biol; 2012; 736():517-30. PubMed ID: 22161349
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Logical modelling of regulatory networks with GINsim 2.3.
    Naldi A; Berenguier D; Fauré A; Lopez F; Thieffry D; Chaouiya C
    Biosystems; 2009 Aug; 97(2):134-9. PubMed ID: 19426782
    [TBL] [Abstract][Full Text] [Related]  

  • 9. ODE-Based Modeling of Complex Regulatory Circuits.
    Seaton DD
    Methods Mol Biol; 2017; 1629():317-330. PubMed ID: 28623594
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Recipes for Analysis of Molecular Networks Using the Data2Dynamics Modeling Environment.
    Steiert B; Kreutz C; Raue A; Timmer J
    Methods Mol Biol; 2019; 1945():341-362. PubMed ID: 30945255
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Transient dynamics of reduced-order models of genetic regulatory networks.
    Pal R; Bhattacharya S
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(4):1230-44. PubMed ID: 22411891
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Visualization, documentation, analysis, and communication of large-scale gene regulatory networks.
    Longabaugh WJ; Davidson EH; Bolouri H
    Biochim Biophys Acta; 2009 Apr; 1789(4):363-74. PubMed ID: 18757046
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Stochastic Differential Equations for Practical Simulation of Gene Circuits.
    Picó J; Vignoni A; Boada Y
    Methods Mol Biol; 2021; 2229():41-90. PubMed ID: 33405216
    [TBL] [Abstract][Full Text] [Related]  

  • 14. In Silico Evolution of Signaling Networks Using Rule-Based Models: Bistable Response Dynamics.
    Feng S; Soyer OS
    Methods Mol Biol; 2019; 1945():315-339. PubMed ID: 30945254
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Efficiently Encoding Complex Biochemical Models with the Multistate Model Builder (MSMB).
    Palmisano A; Hoops S; Watson LT; Jones TC; Tyson JJ; Shaffer CA
    Methods Mol Biol; 2019; 1945():119-139. PubMed ID: 30945244
    [TBL] [Abstract][Full Text] [Related]  

  • 16. FPGA Accelerated Analysis of Boolean Gene Regulatory Networks.
    Manica M; Polig R; Purandare M; Mathis R; Hagleitner C; Martinez MR
    IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(6):2141-2147. PubMed ID: 31494553
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli.
    Batt G; Ropers D; de Jong H; Geiselmann J; Mateescu R; Page M; Schneider D
    Bioinformatics; 2005 Jun; 21 Suppl 1():i19-28. PubMed ID: 15961457
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Petri nets in Snoopy: a unifying framework for the graphical display, computational modelling, and simulation of bacterial regulatory networks.
    Marwan W; Rohr C; Heiner M
    Methods Mol Biol; 2012; 804():409-37. PubMed ID: 22144165
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Modelling gene and protein regulatory networks with answer set programming.
    Fayruzov T; Janssen J; Vermeir D; Cornelis C; De Cock M
    Int J Data Min Bioinform; 2011; 5(2):209-29. PubMed ID: 21544955
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Inferring regulatory networks.
    Li H; Xuan J; Wang Y; Zhan M
    Front Biosci; 2008 Jan; 13():263-75. PubMed ID: 17981545
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.