These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

133 related articles for article (PubMed ID: 19399761)

  • 21. CORCEMA refinement of the bound ligand conformation within the protein binding pocket in reversibly forming weak complexes using STD-NMR intensities.
    Jayalakshmi V; Rama Krishna N
    J Magn Reson; 2004 May; 168(1):36-45. PubMed ID: 15082247
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Comprehensive identification of "druggable" protein ligand binding sites.
    An J; Totrov M; Abagyan R
    Genome Inform; 2004; 15(2):31-41. PubMed ID: 15706489
    [TBL] [Abstract][Full Text] [Related]  

  • 23. InCa-SiteFinder: a method for structure-based prediction of inositol and carbohydrate binding sites on proteins.
    Kulharia M; Bridgett SJ; Goody RS; Jackson RM
    J Mol Graph Model; 2009 Oct; 28(3):297-303. PubMed ID: 19762259
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Combining geometric pocket detection and desolvation properties to detect putative ligand binding sites on proteins.
    Schneider S; Zacharias M
    J Struct Biol; 2012 Dec; 180(3):546-50. PubMed ID: 23023089
    [TBL] [Abstract][Full Text] [Related]  

  • 25. An extensive test of 14 scoring functions using the PDBbind refined set of 800 protein-ligand complexes.
    Wang R; Lu Y; Fang X; Wang S
    J Chem Inf Comput Sci; 2004; 44(6):2114-25. PubMed ID: 15554682
    [TBL] [Abstract][Full Text] [Related]  

  • 26. A general and fast scoring function for protein-ligand interactions: a simplified potential approach.
    Muegge I; Martin YC
    J Med Chem; 1999 Mar; 42(5):791-804. PubMed ID: 10072678
    [TBL] [Abstract][Full Text] [Related]  

  • 27. The automatic search for ligand binding sites in proteins of known three-dimensional structure using only geometric criteria.
    Peters KP; Fauck J; Frömmel C
    J Mol Biol; 1996 Feb; 256(1):201-13. PubMed ID: 8609611
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
    Najmanovich R; Kurbatova N; Thornton J
    Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Prediction of protein-ligand complex structure by docking software guided by other complex structures.
    Fukunishi Y; Nakamura H
    J Mol Graph Model; 2008 Feb; 26(6):1030-3. PubMed ID: 17692546
    [TBL] [Abstract][Full Text] [Related]  

  • 30. General and targeted statistical potentials for protein-ligand interactions.
    Mooij WT; Verdonk ML
    Proteins; 2005 Nov; 61(2):272-87. PubMed ID: 16106379
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Comparative assessment of scoring functions on a diverse test set.
    Cheng T; Li X; Li Y; Liu Z; Wang R
    J Chem Inf Model; 2009 Apr; 49(4):1079-93. PubMed ID: 19358517
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Lessons in molecular recognition: the effects of ligand and protein flexibility on molecular docking accuracy.
    Erickson JA; Jalaie M; Robertson DH; Lewis RA; Vieth M
    J Med Chem; 2004 Jan; 47(1):45-55. PubMed ID: 14695819
    [TBL] [Abstract][Full Text] [Related]  

  • 33. A consensus-binding structure for adenine at the atomic level permits searching for the ligand site in a wide spectrum of adenine-containing complexes.
    Kuttner YY; Sobolev V; Raskind A; Edelman M
    Proteins; 2003 Aug; 52(3):400-11. PubMed ID: 12866051
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Exploring protein-ligand recognition with Binding MOAD.
    Smith RD; Hu L; Falkner JA; Benson ML; Nerothin JP; Carlson HA
    J Mol Graph Model; 2006 May; 24(6):414-25. PubMed ID: 16168689
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Binding similarity network of ligand.
    Park K; Kim D
    Proteins; 2008 May; 71(2):960-71. PubMed ID: 18004762
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking.
    Huang SY; Zou X
    Proteins; 2007 Feb; 66(2):399-421. PubMed ID: 17096427
    [TBL] [Abstract][Full Text] [Related]  

  • 37. PSI-DOCK: towards highly efficient and accurate flexible ligand docking.
    Pei J; Wang Q; Liu Z; Li Q; Yang K; Lai L
    Proteins; 2006 Mar; 62(4):934-46. PubMed ID: 16395666
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Improved protein-ligand docking using GOLD.
    Verdonk ML; Cole JC; Hartshorn MJ; Murray CW; Taylor RD
    Proteins; 2003 Sep; 52(4):609-23. PubMed ID: 12910460
    [TBL] [Abstract][Full Text] [Related]  

  • 39. A critical comparative assessment of predictions of protein-binding sites for biologically relevant organic compounds.
    Chen K; Mizianty MJ; Gao J; Kurgan L
    Structure; 2011 May; 19(5):613-21. PubMed ID: 21565696
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A general approach for developing system-specific functions to score protein-ligand docked complexes using support vector inductive logic programming.
    Amini A; Shrimpton PJ; Muggleton SH; Sternberg MJ
    Proteins; 2007 Dec; 69(4):823-31. PubMed ID: 17910057
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.