320 related articles for article (PubMed ID: 19402728)
1. Simulating the kinetics and thermodynamics of transitions via forward flux/umbrella sampling.
Borrero EE; Escobedo FA
J Phys Chem B; 2009 May; 113(18):6434-45. PubMed ID: 19402728
[TBL] [Abstract][Full Text] [Related]
2. Reaction coordinates and transition pathways of rare events via forward flux sampling.
Borrero EE; Escobedo FA
J Chem Phys; 2007 Oct; 127(16):164101. PubMed ID: 17979313
[TBL] [Abstract][Full Text] [Related]
3. Optimizing the sampling and staging for simulations of rare events via forward flux sampling schemes.
Borrero EE; Escobedo FA
J Chem Phys; 2008 Jul; 129(2):024115. PubMed ID: 18624524
[TBL] [Abstract][Full Text] [Related]
4. Rare events via multiple reaction channels sampled by path replica exchange.
Bolhuis PG
J Chem Phys; 2008 Sep; 129(11):114108. PubMed ID: 19044951
[TBL] [Abstract][Full Text] [Related]
5. Separating forward and backward pathways in nonequilibrium umbrella sampling.
Dickson A; Warmflash A; Dinner AR
J Chem Phys; 2009 Oct; 131(15):154104. PubMed ID: 20568844
[TBL] [Abstract][Full Text] [Related]
6. Overcoming barriers in trajectory space: mechanism and kinetics of rare events via Wang-Landau enhanced transition path sampling.
Borrero EE; Dellago C
J Chem Phys; 2010 Oct; 133(13):134112. PubMed ID: 20942528
[TBL] [Abstract][Full Text] [Related]
7. Kinetics and mechanism of the unfolding native-to-loop transition of Trp-cage in explicit solvent via optimized forward flux sampling simulations.
Velez-Vega C; Borrero EE; Escobedo FA
J Chem Phys; 2010 Sep; 133(10):105103. PubMed ID: 20849192
[TBL] [Abstract][Full Text] [Related]
8. Multiple state transition path sampling.
Rogal J; Bolhuis PG
J Chem Phys; 2008 Dec; 129(22):224107. PubMed ID: 19071907
[TBL] [Abstract][Full Text] [Related]
9. Kinetics and reaction coordinate for the isomerization of alanine dipeptide by a forward flux sampling protocol.
Velez-Vega C; Borrero EE; Escobedo FA
J Chem Phys; 2009 Jun; 130(22):225101. PubMed ID: 19530790
[TBL] [Abstract][Full Text] [Related]
10. Automatic, optimized interface placement in forward flux sampling simulations.
Kratzer K; Arnold A; Allen RJ
J Chem Phys; 2013 Apr; 138(16):164112. PubMed ID: 23635116
[TBL] [Abstract][Full Text] [Related]
11. Precision shooting: Sampling long transition pathways.
Grünwald M; Dellago C; Geissler PL
J Chem Phys; 2008 Nov; 129(19):194101. PubMed ID: 19026039
[TBL] [Abstract][Full Text] [Related]
12. Exploring reaction pathways with transition path and umbrella sampling: application to methyl maltoside.
Dimelow RJ; Bryce RA; Masters AJ; Hillier IH; Burton NA
J Chem Phys; 2006 Mar; 124(11):114113. PubMed ID: 16555880
[TBL] [Abstract][Full Text] [Related]
13. Simulating rare events in equilibrium or nonequilibrium stochastic systems.
Allen RJ; Frenkel D; ten Wolde PR
J Chem Phys; 2006 Jan; 124(2):024102. PubMed ID: 16422566
[TBL] [Abstract][Full Text] [Related]
14. Bennett's acceptance ratio and histogram analysis methods enhanced by umbrella sampling along a reaction coordinate in configurational space.
Kim I; Allen TW
J Chem Phys; 2012 Apr; 136(16):164103. PubMed ID: 22559466
[TBL] [Abstract][Full Text] [Related]
15. From transition paths to transition states and rate coefficients.
Hummer G
J Chem Phys; 2004 Jan; 120(2):516-23. PubMed ID: 15267886
[TBL] [Abstract][Full Text] [Related]
16. Improved transition path sampling methods for simulation of rare events.
Chopra M; Malshe R; Reddy AS; de Pablo JJ
J Chem Phys; 2008 Apr; 128(14):144104. PubMed ID: 18412420
[TBL] [Abstract][Full Text] [Related]
17. Directionally negative friction: a method for enhanced sampling of rare event kinetics.
MacFadyen J; Wereszczynski J; Andricioaei I
J Chem Phys; 2008 Mar; 128(11):114112. PubMed ID: 18361559
[TBL] [Abstract][Full Text] [Related]
18. Enhanced sampling of nonequilibrium steady states.
Dickson A; Dinner AR
Annu Rev Phys Chem; 2010; 61():441-59. PubMed ID: 20367083
[TBL] [Abstract][Full Text] [Related]
19. On the efficiency of biased sampling of the multiple state path ensemble.
Rogal J; Bolhuis PG
J Chem Phys; 2010 Jul; 133(3):034101. PubMed ID: 20649302
[TBL] [Abstract][Full Text] [Related]
20. Monte Carlo method for computing density of states and quench probability of potential energy and enthalpy landscapes.
Mauro JC; Loucks RJ; Balakrishnan J; Raghavan S
J Chem Phys; 2007 May; 126(19):194103. PubMed ID: 17523794
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
