543 related articles for article (PubMed ID: 19411852)
1. Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids.
Iyer LM; Tahiliani M; Rao A; Aravind L
Cell Cycle; 2009 Jun; 8(11):1698-710. PubMed ID: 19411852
[TBL] [Abstract][Full Text] [Related]
2. Computational identification of novel biochemical systems involved in oxidation, glycosylation and other complex modifications of bases in DNA.
Iyer LM; Zhang D; Burroughs AM; Aravind L
Nucleic Acids Res; 2013 Sep; 41(16):7635-55. PubMed ID: 23814188
[TBL] [Abstract][Full Text] [Related]
3. Lineage-specific expansions of TET/JBP genes and a new class of DNA transposons shape fungal genomic and epigenetic landscapes.
Iyer LM; Zhang D; de Souza RF; Pukkila PJ; Rao A; Aravind L
Proc Natl Acad Sci U S A; 2014 Feb; 111(5):1676-83. PubMed ID: 24398522
[TBL] [Abstract][Full Text] [Related]
4. Natural history of eukaryotic DNA methylation systems.
Iyer LM; Abhiman S; Aravind L
Prog Mol Biol Transl Sci; 2011; 101():25-104. PubMed ID: 21507349
[TBL] [Abstract][Full Text] [Related]
5. The DNA-repair protein AlkB, EGL-9, and leprecan define new families of 2-oxoglutarate- and iron-dependent dioxygenases.
Aravind L; Koonin EV
Genome Biol; 2001; 2(3):RESEARCH0007. PubMed ID: 11276424
[TBL] [Abstract][Full Text] [Related]
6. Introduction: Metals in Biology: α-Ketoglutarate/Iron-Dependent Dioxygenases.
Guengerich FP
J Biol Chem; 2015 Aug; 290(34):20700-20701. PubMed ID: 26152720
[TBL] [Abstract][Full Text] [Related]
7. A non-heme iron-mediated chemical demethylation in DNA and RNA.
Yi C; Yang CG; He C
Acc Chem Res; 2009 Apr; 42(4):519-29. PubMed ID: 19852088
[TBL] [Abstract][Full Text] [Related]
8. Schizosaccharomyces pombe Ofd2 is a nuclear 2-oxoglutarate and iron dependent dioxygenase interacting with histones.
Korvald H; Mølstad Moe AM; Cederkvist FH; Thiede B; Laerdahl JK; Bjørås M; Alseth I
PLoS One; 2011; 6(9):e25188. PubMed ID: 21949882
[TBL] [Abstract][Full Text] [Related]
9. ALKBHs-facilitated RNA modifications and de-modifications.
A Alemu E; He C; Klungland A
DNA Repair (Amst); 2016 Aug; 44():87-91. PubMed ID: 27237585
[TBL] [Abstract][Full Text] [Related]
10. Human ABH3 structure and key residues for oxidative demethylation to reverse DNA/RNA damage.
Sundheim O; Vågbø CB; Bjørås M; Sousa MM; Talstad V; Aas PA; Drabløs F; Krokan HE; Tainer JA; Slupphaug G
EMBO J; 2006 Jul; 25(14):3389-97. PubMed ID: 16858410
[TBL] [Abstract][Full Text] [Related]
11. The AlkB Family of Fe(II)/α-Ketoglutarate-dependent Dioxygenases: Repairing Nucleic Acid Alkylation Damage and Beyond.
Fedeles BI; Singh V; Delaney JC; Li D; Essigmann JM
J Biol Chem; 2015 Aug; 290(34):20734-20742. PubMed ID: 26152727
[TBL] [Abstract][Full Text] [Related]
12. Bioinformatics and functional analysis define four distinct groups of AlkB DNA-dioxygenases in bacteria.
van den Born E; Bekkelund A; Moen MN; Omelchenko MV; Klungland A; Falnes PØ
Nucleic Acids Res; 2009 Nov; 37(21):7124-36. PubMed ID: 19786499
[TBL] [Abstract][Full Text] [Related]
13. Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase.
Yi C; Jia G; Hou G; Dai Q; Zhang W; Zheng G; Jian X; Yang CG; Cui Q; He C
Nature; 2010 Nov; 468(7321):330-3. PubMed ID: 21068844
[TBL] [Abstract][Full Text] [Related]
14. Simultaneous sequencing of oxidized methylcytosines produced by TET/JBP dioxygenases in Coprinopsis cinerea.
Chavez L; Huang Y; Luong K; Agarwal S; Iyer LM; Pastor WA; Hench VK; Frazier-Bowers SA; Korol E; Liu S; Tahiliani M; Wang Y; Clark TA; Korlach J; Pukkila PJ; Aravind L; Rao A
Proc Natl Acad Sci U S A; 2014 Dec; 111(48):E5149-58. PubMed ID: 25406324
[TBL] [Abstract][Full Text] [Related]
15. Phage-encoded ten-eleven translocation dioxygenase (TET) is active in C5-cytosine hypermodification in DNA.
Burke EJ; Rodda SS; Lund SR; Sun Z; Zeroka MR; O'Toole KH; Parker MJ; Doshi DS; Guan C; Lee YJ; Dai N; Hough DM; Shnider DA; Corrêa IR; Weigele PR; Saleh L
Proc Natl Acad Sci U S A; 2021 Jun; 118(26):. PubMed ID: 34155108
[TBL] [Abstract][Full Text] [Related]
16. Origin and evolution of peptide-modifying dioxygenases and identification of the wybutosine hydroxylase/hydroperoxidase.
Iyer LM; Abhiman S; de Souza RF; Aravind L
Nucleic Acids Res; 2010 Sep; 38(16):5261-79. PubMed ID: 20423905
[TBL] [Abstract][Full Text] [Related]
17. Kinetic Studies on the 2-Oxoglutarate/Fe(II)-Dependent Nucleic Acid Modifying Enzymes from the AlkB and TET Families.
Peng Z; Ma J; Christov CZ; Karabencheva-Christova T; Lehnert N; Li D
DNA (Basel); 2023 Jun; 3(2):65-84. PubMed ID: 38698914
[TBL] [Abstract][Full Text] [Related]
18. Viral AlkB proteins repair RNA damage by oxidative demethylation.
van den Born E; Omelchenko MV; Bekkelund A; Leihne V; Koonin EV; Dolja VV; Falnes PØ
Nucleic Acids Res; 2008 Oct; 36(17):5451-61. PubMed ID: 18718927
[TBL] [Abstract][Full Text] [Related]
19. Distribution and regulatory roles of oxidized 5-methylcytosines in DNA and RNA of the basidiomycete fungi
Ličytė J; Kvederavičiūtė K; Rukšėnaitė A; Godliauskaitė E; Gibas P; Tomkutė V; Petraitytė G; Masevičius V; Klimašauskas S; Kriukienė E
Open Biol; 2022 Mar; 12(3):210302. PubMed ID: 35232254
[TBL] [Abstract][Full Text] [Related]
20. JBP1 and JBP2 proteins are Fe2+/2-oxoglutarate-dependent dioxygenases regulating hydroxylation of thymidine residues in trypanosome DNA.
Cliffe LJ; Hirsch G; Wang J; Ekanayake D; Bullard W; Hu M; Wang Y; Sabatini R
J Biol Chem; 2012 Jun; 287(24):19886-95. PubMed ID: 22514282
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
