138 related articles for article (PubMed ID: 19422688)
1. Improving gene-finding in Chlamydomonas reinhardtii:GreenGenie2.
Kwan AL; Li L; Kulp DC; Dutcher SK; Stormo GD
BMC Genomics; 2009 May; 10():210. PubMed ID: 19422688
[TBL] [Abstract][Full Text] [Related]
2. EST assembly supported by a draft genome sequence: an analysis of the Chlamydomonas reinhardtii transcriptome.
Jain M; Shrager J; Harris EH; Halbrook R; Grossman AR; Hauser C; Vallon O
Nucleic Acids Res; 2007; 35(6):2074-83. PubMed ID: 17355987
[TBL] [Abstract][Full Text] [Related]
3. Concerted action of the new Genomic Peptide Finder and AUGUSTUS allows for automated proteogenomic annotation of the Chlamydomonas reinhardtii genome.
Specht M; Stanke M; Terashima M; Naumann-Busch B; Janssen I; Höhner R; Hom EF; Liang C; Hippler M
Proteomics; 2011 May; 11(9):1814-23. PubMed ID: 21432999
[TBL] [Abstract][Full Text] [Related]
4. Genome-wide analysis of alternative splicing in Chlamydomonas reinhardtii.
Labadorf A; Link A; Rogers MF; Thomas J; Reddy AS; Ben-Hur A
BMC Genomics; 2010 Feb; 11():114. PubMed ID: 20163725
[TBL] [Abstract][Full Text] [Related]
5. Using ESTs to improve the accuracy of de novo gene prediction.
Wei C; Brent MR
BMC Bioinformatics; 2006 Jul; 7():327. PubMed ID: 16817966
[TBL] [Abstract][Full Text] [Related]
6. Expressed sequence tags with cDNA termini: previously overlooked resources for gene annotation and transcriptome exploration in Chlamydomonas reinhardtii.
Liang C; Liu Y; Liu L; Davis AC; Shen Y; Li QQ
Genetics; 2008 May; 179(1):83-93. PubMed ID: 18493042
[TBL] [Abstract][Full Text] [Related]
7. Identification and Characterization of Novel miRNAs in Chlamydomonas reinhardtii by Computational Methods.
Hajieghrari B; Farrokhi N; Goliaei B; Kavousi K
Microrna; 2016; 5(1):66-77. PubMed ID: 28105907
[TBL] [Abstract][Full Text] [Related]
8. A large scale structural analysis of cDNAs in a unicellular green alga, Chlamydomonas reinhardtii. I. Generation of 3433 non-redundant expressed sequence tags.
Asamizu E; Nakamura Y; Sato S; Fukuzawa H; Tabata S
DNA Res; 1999 Dec; 6(6):369-73. PubMed ID: 10691129
[TBL] [Abstract][Full Text] [Related]
9. Ab initio gene finding in Drosophila genomic DNA.
Salamov AA; Solovyev VV
Genome Res; 2000 Apr; 10(4):516-22. PubMed ID: 10779491
[TBL] [Abstract][Full Text] [Related]
10. Analysis of Chlamydomonas reinhardtii genome structure using large-scale sequencing of regions on linkage groups I and III.
Li JB; Lin S; Jia H; Wu H; Roe BA; Kulp D; Stormo GD; Dutcher SK
J Eukaryot Microbiol; 2003; 50(3):145-55. PubMed ID: 12836870
[TBL] [Abstract][Full Text] [Related]
11. Systematic prediction of cis-regulatory elements in the Chlamydomonas reinhardtii genome using comparative genomics.
Ding J; Li X; Hu H
Plant Physiol; 2012 Oct; 160(2):613-23. PubMed ID: 22915576
[TBL] [Abstract][Full Text] [Related]
12. Genie--gene finding in Drosophila melanogaster.
Reese MG; Kulp D; Tammana H; Haussler D
Genome Res; 2000 Apr; 10(4):529-38. PubMed ID: 10779493
[TBL] [Abstract][Full Text] [Related]
13. Generation of expressed sequence tags from low-CO2 and high-CO2 adapted cells of Chlamydomonas reinhardtii.
Asamizu E; Miura K; Kucho K; Inoue Y; Fukuzawa H; Ohyama K; Nakamura Y; Tabata S
DNA Res; 2000 Oct; 7(5):305-7. PubMed ID: 11089912
[TBL] [Abstract][Full Text] [Related]
14. AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome.
Stanke M; Tzvetkova A; Morgenstern B
Genome Biol; 2006; 7 Suppl 1(Suppl 1):S11.1-8. PubMed ID: 16925833
[TBL] [Abstract][Full Text] [Related]
15. Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.
Brendel V; Xing L; Zhu W
Bioinformatics; 2004 May; 20(7):1157-69. PubMed ID: 14764557
[TBL] [Abstract][Full Text] [Related]
16. Chlamydomonas reinhardtii genome project. A guide to the generation and use of the cDNA information.
Shrager J; Hauser C; Chang CW; Harris EH; Davies J; McDermott J; Tamse R; Zhang Z; Grossman AR
Plant Physiol; 2003 Feb; 131(2):401-8. PubMed ID: 12586865
[TBL] [Abstract][Full Text] [Related]
17. Gene models from ESTs (GeneModelEST): an application on the Solanum lycopersicum genome.
D'Agostino N; Traini A; Frusciante L; Chiusano ML
BMC Bioinformatics; 2007 Mar; 8 Suppl 1(Suppl 1):S9. PubMed ID: 17430576
[TBL] [Abstract][Full Text] [Related]
18. The chloroplast gene cluster containing psbF, psbL, petG and rps3 is conserved in Chlamydomonas.
Turmel M; Otis C
Curr Genet; 1994 Dec; 27(1):54-61. PubMed ID: 7750147
[TBL] [Abstract][Full Text] [Related]
19. Integrating alternative splicing detection into gene prediction.
Foissac S; Schiex T
BMC Bioinformatics; 2005 Feb; 6():25. PubMed ID: 15705189
[TBL] [Abstract][Full Text] [Related]
20. A Plasmodium falciparum FcB1-schizont-EST collection providing clues to schizont specific gene structure and polymorphism.
Florent I; Porcel BM; Guillaume E; Da Silva C; Artiguenave F; Maréchal E; Bréhélin L; Gascuel O; Charneau S; Wincker P; Grellier P
BMC Genomics; 2009 May; 10():235. PubMed ID: 19454033
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]