These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

124 related articles for article (PubMed ID: 19425130)

  • 1. Generalized reaction patterns for prediction of unknown enzymatic reactions.
    Shimizu Y; Hattori M; Goto S; Kanehisa M
    Genome Inform; 2008; 20():149-58. PubMed ID: 19425130
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Systematic analysis of enzyme-catalyzed reaction patterns and prediction of microbial biodegradation pathways.
    Oh M; Yamada T; Hattori M; Goto S; Kanehisa M
    J Chem Inf Model; 2007; 47(4):1702-12. PubMed ID: 17516640
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactions.
    Kotera M; Okuno Y; Hattori M; Goto S; Kanehisa M
    J Am Chem Soc; 2004 Dec; 126(50):16487-98. PubMed ID: 15600352
    [TBL] [Abstract][Full Text] [Related]  

  • 4. From genomics to chemical genomics: new developments in KEGG.
    Kanehisa M; Goto S; Hattori M; Aoki-Kinoshita KF; Itoh M; Kawashima S; Katayama T; Araki M; Hirakawa M
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D354-7. PubMed ID: 16381885
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Genome-scale classification of metabolic reactions and assignment of EC numbers with self-organizing maps.
    Latino DA; Zhang QY; Aires-de-Sousa J
    Bioinformatics; 2008 Oct; 24(19):2236-44. PubMed ID: 18676416
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Automatic assignment of reaction operators to enzymatic reactions.
    Leber M; Egelhofer V; Schomburg I; Schomburg D
    Bioinformatics; 2009 Dec; 25(23):3135-42. PubMed ID: 19783831
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Assignment of EC numbers to enzymatic reactions with MOLMAP reaction descriptors and random forests.
    Latino DA; Aires-de-Sousa J
    J Chem Inf Model; 2009 Jul; 49(7):1839-46. PubMed ID: 19588957
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PathPred: an enzyme-catalyzed metabolic pathway prediction server.
    Moriya Y; Shigemizu D; Hattori M; Tokimatsu T; Kotera M; Goto S; Kanehisa M
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W138-43. PubMed ID: 20435670
    [TBL] [Abstract][Full Text] [Related]  

  • 9. E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs.
    Yamanishi Y; Hattori M; Kotera M; Goto S; Kanehisa M
    Bioinformatics; 2009 Jun; 25(12):i179-86. PubMed ID: 19477985
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Enzyme genomics: Application of general enzymatic screens to discover new enzymes.
    Kuznetsova E; Proudfoot M; Sanders SA; Reinking J; Savchenko A; Arrowsmith CH; Edwards AM; Yakunin AF
    FEMS Microbiol Rev; 2005 Apr; 29(2):263-79. PubMed ID: 15808744
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Extraction and analysis of chemical modification patterns in drug development.
    Shigemizu D; Araki M; Okuda S; Goto S; Kanehisa M
    J Chem Inf Model; 2009 Apr; 49(4):1122-9. PubMed ID: 19391632
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Similarity perception of reactions catalyzed by oxidoreductases and hydrolases using different classification methods.
    Hu X; Yan A; Tan T; Sacher O; Gasteiger J
    J Chem Inf Model; 2010 Jun; 50(6):1089-100. PubMed ID: 20515020
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ECOH: an enzyme commission number predictor using mutual information and a support vector machine.
    Matsuta Y; Ito M; Tohsato Y
    Bioinformatics; 2013 Feb; 29(3):365-72. PubMed ID: 23220570
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Chemical and genomic evolution of enzyme-catalyzed reaction networks.
    Kanehisa M
    FEBS Lett; 2013 Sep; 587(17):2731-7. PubMed ID: 23816707
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Reaction graph kernels predict EC numbers of unknown enzymatic reactions in plant secondary metabolism.
    Saigo H; Hattori M; Kashima H; Tsuda K
    BMC Bioinformatics; 2010 Jan; 11 Suppl 1(Suppl 1):S31. PubMed ID: 20122204
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Assignment of EC numbers to enzymatic reactions with reaction difference fingerprints.
    Hu QN; Zhu H; Li X; Zhang M; Deng Z; Yang X; Deng Z
    PLoS One; 2012; 7(12):e52901. PubMed ID: 23285222
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Use of pathway analysis and genome context methods for functional genomics of Mycoplasma pneumoniae nucleotide metabolism.
    Pachkov M; Dandekar T; Korbel J; Bork P; Schuster S
    Gene; 2007 Jul; 396(2):215-25. PubMed ID: 17467928
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Efficacy of function specific 3D-motifs in enzyme classification according to their EC-numbers.
    Rahimi A; Madadkar-Sobhani A; Touserkani R; Goliaei B
    J Theor Biol; 2013 Nov; 336():36-43. PubMed ID: 23871713
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers.
    Green ML; Karp PD
    Nucleic Acids Res; 2005; 33(13):4035-9. PubMed ID: 16034025
    [TBL] [Abstract][Full Text] [Related]  

  • 20. LIGAND database for enzymes, compounds and reactions.
    Goto S; Nishioka T; Kanehisa M
    Nucleic Acids Res; 1999 Jan; 27(1):377-9. PubMed ID: 9847234
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.