205 related articles for article (PubMed ID: 19425155)
1. Modelling the evolution of protein coding sequences sampled from Measurably Evolving Populations.
Goode M; Guindon S; Rodrigo A
Genome Inform; 2008; 21():150-64. PubMed ID: 19425155
[TBL] [Abstract][Full Text] [Related]
2. A model of directional selection applied to the evolution of drug resistance in HIV-1.
Seoighe C; Ketwaroo F; Pillay V; Scheffler K; Wood N; Duffet R; Zvelebil M; Martinson N; McIntyre J; Morris L; Hide W
Mol Biol Evol; 2007 Apr; 24(4):1025-31. PubMed ID: 17272680
[TBL] [Abstract][Full Text] [Related]
3. An empirical codon model for protein sequence evolution.
Kosiol C; Holmes I; Goldman N
Mol Biol Evol; 2007 Jul; 24(7):1464-79. PubMed ID: 17400572
[TBL] [Abstract][Full Text] [Related]
4. Selective pressures at a codon-level predict deleterious mutations in human disease genes.
Arbiza L; Duchi S; Montaner D; Burguet J; Pantoja-Uceda D; Pineda-Lucena A; Dopazo J; Dopazo H
J Mol Biol; 2006 May; 358(5):1390-404. PubMed ID: 16584746
[TBL] [Abstract][Full Text] [Related]
5. Synonymous substitutions substantially improve evolutionary inference from highly diverged proteins.
Seo TK; Kishino H
Syst Biol; 2008 Jun; 57(3):367-77. PubMed ID: 18570032
[TBL] [Abstract][Full Text] [Related]
6. A combined empirical and mechanistic codon model.
Doron-Faigenboim A; Pupko T
Mol Biol Evol; 2007 Feb; 24(2):388-97. PubMed ID: 17110464
[TBL] [Abstract][Full Text] [Related]
7. Lost in translation: implications of HIV-1 codon usage for immune escape and drug resistance.
Kijak GH; Currier JR; Tovanabutra S; Cox JH; Michael NL; Wegner SA; Birx DL; McCutchan FE
AIDS Rev; 2004; 6(1):54-60. PubMed ID: 15168741
[TBL] [Abstract][Full Text] [Related]
8. Inferring evolutionary rates using serially sampled sequences from several populations.
Rodrigo AG; Goode M; Forsberg R; Ross HA; Drummond A
Mol Biol Evol; 2003 Dec; 20(12):2010-8. PubMed ID: 12949147
[TBL] [Abstract][Full Text] [Related]
9. Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates.
Mayrose I; Doron-Faigenboim A; Bacharach E; Pupko T
Bioinformatics; 2007 Jul; 23(13):i319-27. PubMed ID: 17646313
[TBL] [Abstract][Full Text] [Related]
10. Likelihood-based clustering (LiBaC) for codon models, a method for grouping sites according to similarities in the underlying process of evolution.
Bao L; Gu H; Dunn KA; Bielawski JP
Mol Biol Evol; 2008 Sep; 25(9):1995-2007. PubMed ID: 18586695
[TBL] [Abstract][Full Text] [Related]
11. A statistical characterization of consistent patterns of human immunodeficiency virus evolution within infected patients.
Williamson S; Perry SM; Bustamante CD; Orive ME; Stearns MN; Kelly JK
Mol Biol Evol; 2005 Mar; 22(3):456-68. PubMed ID: 15509726
[TBL] [Abstract][Full Text] [Related]
12. Estimating the distribution of selection coefficients from phylogenetic data with applications to mitochondrial and viral DNA.
Nielsen R; Yang Z
Mol Biol Evol; 2003 Aug; 20(8):1231-9. PubMed ID: 12777508
[TBL] [Abstract][Full Text] [Related]
13. An evolutionary model for protein-coding regions with conserved RNA structure.
Pedersen JS; Forsberg R; Meyer IM; Hein J
Mol Biol Evol; 2004 Oct; 21(10):1913-22. PubMed ID: 15229291
[TBL] [Abstract][Full Text] [Related]
14. A codon-based model of host-specific selection in parasites, with an application to the influenza A virus.
Forsberg R; Christiansen FB
Mol Biol Evol; 2003 Aug; 20(8):1252-9. PubMed ID: 12777510
[TBL] [Abstract][Full Text] [Related]
15. Codon substitution models based on residue similarity and their applications.
Liu X; Liu H; Guo W; Yu K
Gene; 2012 Nov; 509(1):136-41. PubMed ID: 22902303
[TBL] [Abstract][Full Text] [Related]
16. Testing for covarion-like evolution in protein sequences.
Wang HC; Spencer M; Susko E; Roger AJ
Mol Biol Evol; 2007 Jan; 24(1):294-305. PubMed ID: 17056642
[TBL] [Abstract][Full Text] [Related]
17. A model-based approach to study nearest-neighbor influences reveals complex substitution patterns in non-coding sequences.
Baele G; Van de Peer Y; Vansteelandt S
Syst Biol; 2008 Oct; 57(5):675-92. PubMed ID: 18853356
[TBL] [Abstract][Full Text] [Related]
18. Investigating protein-coding sequence evolution with probabilistic codon substitution models.
Anisimova M; Kosiol C
Mol Biol Evol; 2009 Feb; 26(2):255-71. PubMed ID: 18922761
[TBL] [Abstract][Full Text] [Related]
19. Statistical comparison of nucleotide, amino acid, and codon substitution models for evolutionary analysis of protein-coding sequences.
Seo TK; Kishino H
Syst Biol; 2009 Apr; 58(2):199-210. PubMed ID: 20525578
[TBL] [Abstract][Full Text] [Related]
20. An evolutionary analytical model of a complementary circular code simulating the protein coding genes, the 5' and 3' regions.
Arquès DG; Fallot JP; Michel CJ
Bull Math Biol; 1998 Jan; 60(1):163-94. PubMed ID: 9530018
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
