BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

224 related articles for article (PubMed ID: 19429599)

  • 1. pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination.
    Lobley A; Sadowski MI; Jones DT
    Bioinformatics; 2009 Jul; 25(14):1761-7. PubMed ID: 19429599
    [TBL] [Abstract][Full Text] [Related]  

  • 2. AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings.
    Gewehr JE; Hintermair V; Zimmer R
    Bioinformatics; 2007 May; 23(10):1203-10. PubMed ID: 17379694
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PASS2: an automated database of protein alignments organised as structural superfamilies.
    Bhaduri A; Pugalenthi G; Sowdhamini R
    BMC Bioinformatics; 2004 Apr; 5():35. PubMed ID: 15059245
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Beyond the Twilight Zone: automated prediction of structural properties of proteins by recursive neural networks and remote homology information.
    Mooney C; Pollastri G
    Proteins; 2009 Oct; 77(1):181-90. PubMed ID: 19422056
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Profile-based direct kernels for remote homology detection and fold recognition.
    Rangwala H; Karypis G
    Bioinformatics; 2005 Dec; 21(23):4239-47. PubMed ID: 16188929
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A machine learning information retrieval approach to protein fold recognition.
    Cheng J; Baldi P
    Bioinformatics; 2006 Jun; 22(12):1456-63. PubMed ID: 16547073
    [TBL] [Abstract][Full Text] [Related]  

  • 7. FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties.
    Shi J; Blundell TL; Mizuguchi K
    J Mol Biol; 2001 Jun; 310(1):243-57. PubMed ID: 11419950
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Remote protein homology detection and fold recognition using two-layer support vector machine classifiers.
    Muda HM; Saad P; Othman RM
    Comput Biol Med; 2011 Aug; 41(8):687-99. PubMed ID: 21704312
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Sequence comparison and protein structure prediction.
    Dunbrack RL
    Curr Opin Struct Biol; 2006 Jun; 16(3):374-84. PubMed ID: 16713709
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PFRES: protein fold classification by using evolutionary information and predicted secondary structure.
    Chen K; Kurgan L
    Bioinformatics; 2007 Nov; 23(21):2843-50. PubMed ID: 17942446
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Using evolutionary information for the query and target improves fold recognition.
    Wallner B; Fang H; Ohlson T; Frey-Skött J; Elofsson A
    Proteins; 2004 Feb; 54(2):342-50. PubMed ID: 14696196
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Fast model-based protein homology detection without alignment.
    Hochreiter S; Heusel M; Obermayer K
    Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Application of latent semantic analysis to protein remote homology detection.
    Dong QW; Wang XL; Lin L
    Bioinformatics; 2006 Feb; 22(3):285-90. PubMed ID: 16317074
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Enhanced statistics for local alignment of multiple alignments improves prediction of protein function and structure.
    Frenkel-Morgenstern M; Voet H; Pietrokovski S
    Bioinformatics; 2005 Jul; 21(13):2950-6. PubMed ID: 15870168
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre.
    Bennett-Lovsey RM; Herbert AD; Sternberg MJ; Kelley LA
    Proteins; 2008 Feb; 70(3):611-25. PubMed ID: 17876813
    [TBL] [Abstract][Full Text] [Related]  

  • 16. DOMAC: an accurate, hybrid protein domain prediction server.
    Cheng J
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W354-6. PubMed ID: 17553833
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Pcons5: combining consensus, structural evaluation and fold recognition scores.
    Wallner B; Elofsson A
    Bioinformatics; 2005 Dec; 21(23):4248-54. PubMed ID: 16204344
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The use of automatic tools and human expertise in template-based modeling of CASP8 target proteins.
    Venclovas C; Margelevicius M
    Proteins; 2009; 77 Suppl 9():81-8. PubMed ID: 19639635
    [TBL] [Abstract][Full Text] [Related]  

  • 19. FRalanyzer: a tool for functional analysis of fold-recognition sequence-structure alignments.
    Saini HK; Fischer D
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W499-502. PubMed ID: 17537819
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Prediction of the protein structural class by specific peptide frequencies.
    Costantini S; Facchiano AM
    Biochimie; 2009 Feb; 91(2):226-9. PubMed ID: 18957316
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.