These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

190 related articles for article (PubMed ID: 19429691)

  • 1. HHomp--prediction and classification of outer membrane proteins.
    Remmert M; Linke D; Lupas AN; Söding J
    Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W446-51. PubMed ID: 19429691
    [TBL] [Abstract][Full Text] [Related]  

  • 2. HHsenser: exhaustive transitive profile search using HMM-HMM comparison.
    Söding J; Remmert M; Biegert A; Lupas AN
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W374-8. PubMed ID: 16845029
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Deep learning-driven insights into super protein complexes for outer membrane protein biogenesis in bacteria.
    Gao M; Nakajima An D; Skolnick J
    Elife; 2022 Dec; 11():. PubMed ID: 36576775
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method.
    Bagos PG; Liakopoulos TD; Hamodrakas SJ
    BMC Bioinformatics; 2005 Jan; 6():7. PubMed ID: 15647112
    [TBL] [Abstract][Full Text] [Related]  

  • 5. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria.
    Berven FS; Flikka K; Jensen HB; Eidhammer I
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W394-9. PubMed ID: 15215418
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Supramolecular assemblies underpin turnover of outer membrane proteins in bacteria.
    Rassam P; Copeland NA; Birkholz O; Tóth C; Chavent M; Duncan AL; Cross SJ; Housden NG; Kaminska R; Seger U; Quinn DM; Garrod TJ; Sansom MS; Piehler J; Baumann CG; Kleanthous C
    Nature; 2015 Jul; 523(7560):333-6. PubMed ID: 26061769
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Outer membrane proteins can be simply identified using secondary structure element alignment.
    Yan RX; Chen Z; Zhang Z
    BMC Bioinformatics; 2011 Mar; 12():76. PubMed ID: 21414186
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins.
    Bigelow H; Rost B
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W186-8. PubMed ID: 16844988
    [TBL] [Abstract][Full Text] [Related]  

  • 9. TMB-Hunt: an amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins.
    Garrow AG; Agnew A; Westhead DR
    BMC Bioinformatics; 2005 Mar; 6():56. PubMed ID: 15769290
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Identification of Yersinia pestis and Escherichia coli strains by whole cell and outer membrane protein extracts with mass spectrometry-based proteomics.
    Jabbour RE; Wade MM; Deshpande SV; Stanford MF; Wick CH; Zulich AW; Snyder AP
    J Proteome Res; 2010 Jul; 9(7):3647-55. PubMed ID: 20486690
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Functions of the BamBCDE Lipoproteins Revealed by Bypass Mutations in BamA.
    Hart EM; Silhavy TJ
    J Bacteriol; 2020 Oct; 202(21):. PubMed ID: 32817097
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Predicting transmembrane beta-barrels and interstrand residue interactions from sequence.
    Waldispühl J; Berger B; Clote P; Steyaert JM
    Proteins; 2006 Oct; 65(1):61-74. PubMed ID: 16858668
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes.
    Zhai Y; Saier MH
    Protein Sci; 2002 Sep; 11(9):2196-207. PubMed ID: 12192075
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Conformational Changes That Coordinate the Activity of BamA and BamD Allowing β-Barrel Assembly.
    McCabe AL; Ricci D; Adetunji M; Silhavy TJ
    J Bacteriol; 2017 Oct; 199(20):. PubMed ID: 28760846
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The HHpred interactive server for protein homology detection and structure prediction.
    Söding J; Biegert A; Lupas AN
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W244-8. PubMed ID: 15980461
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins.
    Bagos PG; Liakopoulos TD; Spyropoulos IC; Hamodrakas SJ
    BMC Bioinformatics; 2004 Mar; 5():29. PubMed ID: 15070403
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A Supercomplex Spanning the Inner and Outer Membranes Mediates the Biogenesis of β-Barrel Outer Membrane Proteins in Bacteria.
    Wang Y; Wang R; Jin F; Liu Y; Yu J; Fu X; Chang Z
    J Biol Chem; 2016 Aug; 291(32):16720-9. PubMed ID: 27298319
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Extreme Dynamics in the BamA β-Barrel Seam.
    Doerner PA; Sousa MC
    Biochemistry; 2017 Jun; 56(24):3142-3149. PubMed ID: 28569500
    [TBL] [Abstract][Full Text] [Related]  

  • 19. BamA β16C strand and periplasmic turns are critical for outer membrane protein insertion and assembly.
    Gu Y; Zeng Y; Wang Z; Dong C
    Biochem J; 2017 Nov; 474(23):3951-3961. PubMed ID: 28974626
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Structural and functional analysis of the β-barrel domain of BamA from Escherichia coli.
    Ni D; Wang Y; Yang X; Zhou H; Hou X; Cao B; Lu Z; Zhao X; Yang K; Huang Y
    FASEB J; 2014 Jun; 28(6):2677-85. PubMed ID: 24619089
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.