These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

147 related articles for article (PubMed ID: 19432540)

  • 1. Interpretable numerical descriptors of amino acid space.
    Georgiev AG
    J Comput Biol; 2009 May; 16(5):703-23. PubMed ID: 19432540
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
    Fromer M; Yanover C
    Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins.
    Tomii K; Kanehisa M
    Protein Eng; 1996 Jan; 9(1):27-36. PubMed ID: 9053899
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Novel 3D bio-macromolecular bilinear descriptors for protein science: Predicting protein structural classes.
    Marrero-Ponce Y; Contreras-Torres E; García-Jacas CR; Barigye SJ; Cubillán N; Alvarado YJ
    J Theor Biol; 2015 Jun; 374():125-37. PubMed ID: 25843214
    [TBL] [Abstract][Full Text] [Related]  

  • 5. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS; Honig B
    J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
    [TBL] [Abstract][Full Text] [Related]  

  • 6. AAindex: amino acid index database.
    Kawashima S; Kanehisa M
    Nucleic Acids Res; 2000 Jan; 28(1):374. PubMed ID: 10592278
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Prediction of deleterious functional effects of amino acid mutations using a library of structure-based function descriptors.
    Herrgard S; Cammer SA; Hoffman BT; Knutson S; Gallina M; Speir JA; Fetrow JS; Baxter SM
    Proteins; 2003 Dec; 53(4):806-16. PubMed ID: 14635123
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The ConSurf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structures.
    Glaser F; Rosenberg Y; Kessel A; Pupko T; Ben-Tal N
    Proteins; 2005 Feb; 58(3):610-7. PubMed ID: 15614759
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Classifying G-protein coupled receptors with bagging classification tree.
    Huang Y; Cai J; Ji L; Li Y
    Comput Biol Chem; 2004 Oct; 28(4):275-80. PubMed ID: 15548454
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A balance-evolution artificial bee colony algorithm for protein structure optimization based on a three-dimensional AB off-lattice model.
    Li B; Chiong R; Lin M
    Comput Biol Chem; 2015 Feb; 54():1-12. PubMed ID: 25463349
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Predicting functionally important residues from sequence conservation.
    Capra JA; Singh M
    Bioinformatics; 2007 Aug; 23(15):1875-82. PubMed ID: 17519246
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Graphical models of residue coupling in protein families.
    Thomas J; Ramakrishnan N; Bailey-Kellogg C
    IEEE/ACM Trans Comput Biol Bioinform; 2008; 5(2):183-97. PubMed ID: 18451428
    [TBL] [Abstract][Full Text] [Related]  

  • 13. AAindex: Amino Acid Index Database.
    Kawashima S; Ogata H; Kanehisa M
    Nucleic Acids Res; 1999 Jan; 27(1):368-9. PubMed ID: 9847231
    [TBL] [Abstract][Full Text] [Related]  

  • 14. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J; Feng JA
    Proteins; 2005 Feb; 58(3):628-37. PubMed ID: 15616964
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro-fuzzy classifiers.
    Barenboim M; Masso M; Vaisman II; Jamison DC
    Proteins; 2008 Jun; 71(4):1930-9. PubMed ID: 18186470
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank.
    Bastolla U; Porto M; Roman HE; Vendruscolo M
    BMC Evol Biol; 2006 May; 6():43. PubMed ID: 16737532
    [TBL] [Abstract][Full Text] [Related]  

  • 17. DINAMO: a coupled sequence alignment editor/molecular graphics tool for interactive homology modeling of proteins.
    Hansen M; Bentz J; Baucom A; Gregoret L
    Pac Symp Biocomput; 1998; ():106-17. PubMed ID: 9697175
    [TBL] [Abstract][Full Text] [Related]  

  • 18. An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance.
    Yang AS; Honig B
    J Mol Biol; 2000 Aug; 301(3):665-78. PubMed ID: 10966776
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Library of local descriptors models the core of proteins accurately.
    Drabikowski M; Nowakowski S; Tiuryn J
    Proteins; 2007 Nov; 69(3):499-510. PubMed ID: 17623841
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Support Vector Machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs.
    Shamim MT; Anwaruddin M; Nagarajaram HA
    Bioinformatics; 2007 Dec; 23(24):3320-7. PubMed ID: 17989092
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.