178 related articles for article (PubMed ID: 19435878)
1. FASTR3D: a fast and accurate search tool for similar RNA 3D structures.
Lai CE; Tsai MY; Liu YC; Wang CW; Chen KT; Lu CL
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W287-95. PubMed ID: 19435878
[TBL] [Abstract][Full Text] [Related]
2. R3D-BLAST2: an improved search tool for similar RNA 3D substructures.
Yen CY; Lin JC; Chen KT; Lu CL
BMC Bioinformatics; 2017 Dec; 18(Suppl 16):574. PubMed ID: 29297283
[TBL] [Abstract][Full Text] [Related]
3. RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures.
Popenda M; Blazewicz M; Szachniuk M; Adamiak RW
Nucleic Acids Res; 2008 Jan; 36(Database issue):D386-91. PubMed ID: 17921499
[TBL] [Abstract][Full Text] [Related]
4. R3D-BLAST: a search tool for similar RNA 3D substructures.
Liu YC; Yang CH; Chen KT; Wang JR; Cheng ML; Chung JC; Chiu HT; Lu CL
Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W45-9. PubMed ID: 21624889
[TBL] [Abstract][Full Text] [Related]
5. SARSA: a web tool for structural alignment of RNA using a structural alphabet.
Chang YF; Huang YL; Lu CL
Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W19-24. PubMed ID: 18502774
[TBL] [Abstract][Full Text] [Related]
6. iPARTS: an improved tool of pairwise alignment of RNA tertiary structures.
Wang CW; Chen KT; Lu CL
Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W340-7. PubMed ID: 20507908
[TBL] [Abstract][Full Text] [Related]
7. RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.
Popenda M; Szachniuk M; Blazewicz M; Wasik S; Burke EK; Blazewicz J; Adamiak RW
BMC Bioinformatics; 2010 May; 11():231. PubMed ID: 20459631
[TBL] [Abstract][Full Text] [Related]
8. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
Ferrè F; Ponty Y; Lorenz WA; Clote P
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W659-68. PubMed ID: 17567620
[TBL] [Abstract][Full Text] [Related]
9. WebSTAR3D: a web server for RNA 3D structural alignment.
Holzhauser E; Ge P; Zhang S
Bioinformatics; 2016 Dec; 32(23):3673-3675. PubMed ID: 27497443
[TBL] [Abstract][Full Text] [Related]
10. WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifs.
Petrov AI; Zirbel CL; Leontis NB
Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W50-5. PubMed ID: 21515634
[TBL] [Abstract][Full Text] [Related]
11. iPARTS2: an improved tool for pairwise alignment of RNA tertiary structures, version 2.
Yang CH; Shih CT; Chen KT; Lee PH; Tsai PH; Lin JC; Yen CY; Lin TY; Lu CL
Nucleic Acids Res; 2016 Jul; 44(W1):W328-32. PubMed ID: 27185896
[TBL] [Abstract][Full Text] [Related]
12. SimRNAweb: a web server for RNA 3D structure modeling with optional restraints.
Magnus M; Boniecki MJ; Dawson W; Bujnicki JM
Nucleic Acids Res; 2016 Jul; 44(W1):W315-9. PubMed ID: 27095203
[TBL] [Abstract][Full Text] [Related]
13. RNALogo: a new approach to display structural RNA alignment.
Chang TH; Horng JT; Huang HD
Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W91-6. PubMed ID: 18495753
[TBL] [Abstract][Full Text] [Related]
14. VfoldLA: A web server for loop assembly-based prediction of putative 3D RNA structures.
Xu X; Zhao C; Chen SJ
J Struct Biol; 2019 Sep; 207(3):235-240. PubMed ID: 31173857
[TBL] [Abstract][Full Text] [Related]
15. ModeRNA server: an online tool for modeling RNA 3D structures.
Rother M; Milanowska K; Puton T; Jeleniewicz J; Rother K; Bujnicki JM
Bioinformatics; 2011 Sep; 27(17):2441-2. PubMed ID: 21727140
[TBL] [Abstract][Full Text] [Related]
16. Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels.
Jossinet F; Ludwig TE; Westhof E
Bioinformatics; 2010 Aug; 26(16):2057-9. PubMed ID: 20562414
[TBL] [Abstract][Full Text] [Related]
17. RNA STRAND: the RNA secondary structure and statistical analysis database.
Andronescu M; Bereg V; Hoos HH; Condon A
BMC Bioinformatics; 2008 Aug; 9():340. PubMed ID: 18700982
[TBL] [Abstract][Full Text] [Related]
18. Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure.
Jossinet F; Westhof E
Bioinformatics; 2005 Aug; 21(15):3320-1. PubMed ID: 15905274
[TBL] [Abstract][Full Text] [Related]
19. MultiSETTER: web server for multiple RNA structure comparison.
Čech P; Hoksza D; Svozil D
BMC Bioinformatics; 2015 Aug; 16():253. PubMed ID: 26264783
[TBL] [Abstract][Full Text] [Related]
20. MolLoc: a web tool for the local structural alignment of molecular surfaces.
Angaran S; Bock ME; Garutti C; Guerra C
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W565-70. PubMed ID: 19465382
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
