196 related articles for article (PubMed ID: 19435885)
1. Berkeley PHOG: PhyloFacts orthology group prediction web server.
Datta RS; Meacham C; Samad B; Neyer C; Sjölander K
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W84-9. PubMed ID: 19435885
[TBL] [Abstract][Full Text] [Related]
2. The PhyloFacts FAT-CAT web server: ortholog identification and function prediction using fast approximate tree classification.
Afrasiabi C; Samad B; Dineen D; Meacham C; Sjölander K
Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W242-8. PubMed ID: 23685612
[TBL] [Abstract][Full Text] [Related]
3. Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis.
Glanville JG; Kirshner D; Krishnamurthy N; Sjölander K
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W27-32. PubMed ID: 17488835
[TBL] [Abstract][Full Text] [Related]
4. INTREPID: a web server for prediction of functionally important residues by evolutionary analysis.
Sankararaman S; Kolaczkowski B; Sjölander K
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W390-5. PubMed ID: 19443452
[TBL] [Abstract][Full Text] [Related]
5. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.
Remm M; Storm CE; Sonnhammer EL
J Mol Biol; 2001 Dec; 314(5):1041-52. PubMed ID: 11743721
[TBL] [Abstract][Full Text] [Related]
6. ORCAN-a web-based meta-server for real-time detection and functional annotation of orthologs.
Zielezinski A; Dziubek M; Sliski J; Karlowski WM
Bioinformatics; 2017 Apr; 33(8):1224-1226. PubMed ID: 28057683
[TBL] [Abstract][Full Text] [Related]
7. PHOG-BLAST--a new generation tool for fast similarity search of protein families.
Merkeev IV; Mironov AA
BMC Evol Biol; 2006 Jun; 6():51. PubMed ID: 16792802
[TBL] [Abstract][Full Text] [Related]
8. SIFTER search: a web server for accurate phylogeny-based protein function prediction.
Sahraeian SM; Luo KR; Brenner SE
Nucleic Acids Res; 2015 Jul; 43(W1):W141-7. PubMed ID: 25979264
[TBL] [Abstract][Full Text] [Related]
9. A phylogeny-based benchmarking test for orthology inference reveals the limitations of function-based validation.
Trachana K; Forslund K; Larsson T; Powell S; Doerks T; von Mering C; Bork P
PLoS One; 2014; 9(11):e111122. PubMed ID: 25369365
[TBL] [Abstract][Full Text] [Related]
10. The Princeton Protein Orthology Database (P-POD): a comparative genomics analysis tool for biologists.
Heinicke S; Livstone MS; Lu C; Oughtred R; Kang F; Angiuoli SV; White O; Botstein D; Dolinski K
PLoS One; 2007 Aug; 2(8):e766. PubMed ID: 17712414
[TBL] [Abstract][Full Text] [Related]
11. SATCHMO-JS: a webserver for simultaneous protein multiple sequence alignment and phylogenetic tree construction.
Hagopian R; Davidson JR; Datta RS; Samad B; Jarvis GR; Sjölander K
Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W29-34. PubMed ID: 20430824
[TBL] [Abstract][Full Text] [Related]
12. OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups.
Chen F; Mackey AJ; Stoeckert CJ; Roos DS
Nucleic Acids Res; 2006 Jan; 34(Database issue):D363-8. PubMed ID: 16381887
[TBL] [Abstract][Full Text] [Related]
13. TreeFam: a curated database of phylogenetic trees of animal gene families.
Li H; Coghlan A; Ruan J; Coin LJ; Hériché JK; Osmotherly L; Li R; Liu T; Zhang Z; Bolund L; Wong GK; Zheng W; Dehal P; Wang J; Durbin R
Nucleic Acids Res; 2006 Jan; 34(Database issue):D572-80. PubMed ID: 16381935
[TBL] [Abstract][Full Text] [Related]
14. YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms.
Penkett CJ; Morris JA; Wood V; Bähler J
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W330-4. PubMed ID: 16845020
[TBL] [Abstract][Full Text] [Related]
15. Assessing performance of orthology detection strategies applied to eukaryotic genomes.
Chen F; Mackey AJ; Vermunt JK; Roos DS
PLoS One; 2007 Apr; 2(4):e383. PubMed ID: 17440619
[TBL] [Abstract][Full Text] [Related]
16. Orthology Clusters from Gene Trees with Possvm.
Grau-Bové X; Sebé-Pedrós A
Mol Biol Evol; 2021 Oct; 38(11):5204-5208. PubMed ID: 34352080
[TBL] [Abstract][Full Text] [Related]
17. BPhyOG: an interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes.
Luo Y; Fu C; Zhang DY; Lin K
BMC Bioinformatics; 2007 Jul; 8():266. PubMed ID: 17650344
[TBL] [Abstract][Full Text] [Related]
18. OrthologID: automation of genome-scale ortholog identification within a parsimony framework.
Chiu JC; Lee EK; Egan MG; Sarkar IN; Coruzzi GM; DeSalle R
Bioinformatics; 2006 Mar; 22(6):699-707. PubMed ID: 16410324
[TBL] [Abstract][Full Text] [Related]
19. OrthoMCL: identification of ortholog groups for eukaryotic genomes.
Li L; Stoeckert CJ; Roos DS
Genome Res; 2003 Sep; 13(9):2178-89. PubMed ID: 12952885
[TBL] [Abstract][Full Text] [Related]
20. Predicting functional sites with an automated algorithm suitable for heterogeneous datasets.
La D; Livesay DR
BMC Bioinformatics; 2005 May; 6():116. PubMed ID: 15890082
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
