These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
23. TreeFam: 2008 Update. Ruan J; Li H; Chen Z; Coghlan A; Coin LJ; Guo Y; Hériché JK; Hu Y; Kristiansen K; Li R; Liu T; Moses A; Qin J; Vang S; Vilella AJ; Ureta-Vidal A; Bolund L; Wang J; Durbin R Nucleic Acids Res; 2008 Jan; 36(Database issue):D735-40. PubMed ID: 18056084 [TBL] [Abstract][Full Text] [Related]
24. TreeFam v9: a new website, more species and orthology-on-the-fly. Schreiber F; Patricio M; Muffato M; Pignatelli M; Bateman A Nucleic Acids Res; 2014 Jan; 42(Database issue):D922-5. PubMed ID: 24194607 [TBL] [Abstract][Full Text] [Related]
26. ProGMap: an integrated annotation resource for protein orthology. Kuzniar A; Lin K; He Y; Nijveen H; Pongor S; Leunissen JA Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W428-34. PubMed ID: 19494185 [TBL] [Abstract][Full Text] [Related]
27. CINPER: an interactive web system for pathway prediction for prokaryotes. Mao X; Chen X; Zhang Y; Pangle S; Xu Y PLoS One; 2012; 7(12):e51252. PubMed ID: 23236458 [TBL] [Abstract][Full Text] [Related]
28. Phylogenetic and functional assessment of orthologs inference projects and methods. Altenhoff AM; Dessimoz C PLoS Comput Biol; 2009 Jan; 5(1):e1000262. PubMed ID: 19148271 [TBL] [Abstract][Full Text] [Related]
29. JustOrthologs: a fast, accurate and user-friendly ortholog identification algorithm. Miller JB; Pickett BD; Ridge PG Bioinformatics; 2019 Feb; 35(4):546-552. PubMed ID: 30084941 [TBL] [Abstract][Full Text] [Related]
30. Roundup: a multi-genome repository of orthologs and evolutionary distances. Deluca TF; Wu IH; Pu J; Monaghan T; Peshkin L; Singh S; Wall DP Bioinformatics; 2006 Aug; 22(16):2044-6. PubMed ID: 16777906 [TBL] [Abstract][Full Text] [Related]
31. OrthoDB: the hierarchical catalog of eukaryotic orthologs. Kriventseva EV; Rahman N; Espinosa O; Zdobnov EM Nucleic Acids Res; 2008 Jan; 36(Database issue):D271-5. PubMed ID: 17947323 [TBL] [Abstract][Full Text] [Related]
32. MetaPhOrs 2.0: integrative, phylogeny-based inference of orthology and paralogy across the tree of life. Chorostecki U; Molina M; Pryszcz LP; Gabaldón T Nucleic Acids Res; 2020 Jul; 48(W1):W553-W557. PubMed ID: 32343307 [TBL] [Abstract][Full Text] [Related]
33. POWER: PhylOgenetic WEb Repeater--an integrated and user-optimized framework for biomolecular phylogenetic analysis. Lin CY; Lin FK; Lin CH; Lai LW; Hsu HJ; Chen SH; Hsiung CA Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W553-6. PubMed ID: 15980533 [TBL] [Abstract][Full Text] [Related]
34. PROMALS3D web server for accurate multiple protein sequence and structure alignments. Pei J; Tang M; Grishin NV Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W30-4. PubMed ID: 18503087 [TBL] [Abstract][Full Text] [Related]
35. Orthology prediction methods: a quality assessment using curated protein families. Trachana K; Larsson TA; Powell S; Chen WH; Doerks T; Muller J; Bork P Bioessays; 2011 Oct; 33(10):769-80. PubMed ID: 21853451 [TBL] [Abstract][Full Text] [Related]
36. INTREPID--INformation-theoretic TREe traversal for Protein functional site IDentification. Sankararaman S; Sjölander K Bioinformatics; 2008 Nov; 24(21):2445-52. PubMed ID: 18776193 [TBL] [Abstract][Full Text] [Related]
37. An approach of orthology detection from homologous sequences under minimum evolution. Kim KM; Sung S; Caetano-Anollés G; Han JY; Kim H Nucleic Acids Res; 2008 Oct; 36(17):e110. PubMed ID: 18676448 [TBL] [Abstract][Full Text] [Related]
38. Automatic clustering of orthologs and inparalogs shared by multiple proteomes. Alexeyenko A; Tamas I; Liu G; Sonnhammer EL Bioinformatics; 2006 Jul; 22(14):e9-15. PubMed ID: 16873526 [TBL] [Abstract][Full Text] [Related]
39. Taxonomic colouring of phylogenetic trees of protein sequences. Palidwor G; Reynaud EG; Andrade-Navarro MA BMC Bioinformatics; 2006 Feb; 7():79. PubMed ID: 16503967 [TBL] [Abstract][Full Text] [Related]