BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

212 related articles for article (PubMed ID: 19443440)

  • 1. jpHMM: improving the reliability of recombination prediction in HIV-1.
    Schultz AK; Zhang M; Bulla I; Leitner T; Korber B; Morgenstern B; Stanke M
    Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W647-51. PubMed ID: 19443440
    [TBL] [Abstract][Full Text] [Related]  

  • 2. jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1.
    Zhang M; Schultz AK; Calef C; Kuiken C; Leitner T; Korber B; Morgenstern B; Stanke M
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W463-5. PubMed ID: 16845050
    [TBL] [Abstract][Full Text] [Related]  

  • 3. jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus.
    Schultz AK; Bulla I; Abdou-Chekaraou M; Gordien E; Morgenstern B; Zoaulim F; Dény P; Stanke M
    Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W193-8. PubMed ID: 22600739
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes.
    Schultz AK; Zhang M; Leitner T; Kuiken C; Korber B; Morgenstern B; Stanke M
    BMC Bioinformatics; 2006 May; 7():265. PubMed ID: 16716226
    [TBL] [Abstract][Full Text] [Related]  

  • 5. More accurate recombination prediction in HIV-1 using a robust decoding algorithm for HMMs.
    Truszkowski J; Brown DG
    BMC Bioinformatics; 2011 May; 12():168. PubMed ID: 21586147
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Sequence determinants of breakpoint location during HIV-1 intersubtype recombination.
    Baird HA; Galetto R; Gao Y; Simon-Loriere E; Abreha M; Archer J; Fan J; Robertson DL; Arts EJ; Negroni M
    Nucleic Acids Res; 2006; 34(18):5203-16. PubMed ID: 17003055
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Genetic Characterization of HIV-1 Subtype A1/C/D/B/K Unique Recombinant Form from Eastern Cape, South Africa.
    Adeniyi OV; Obi CL; Ter Goon D; Iweriebor B; Chitha W; Okoh A
    AIDS Res Hum Retroviruses; 2021 Feb; 37(2):162-168. PubMed ID: 33076679
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The Genetic Diversity of HIV-1 Quasispecies Within Primary Infected Individuals.
    Liu Y; Jia L; Su B; Li H; Li Z; Han J; Zhang Y; Zhang T; Li T; Wu H; Li J; Li L
    AIDS Res Hum Retroviruses; 2020 May; 36(5):440-449. PubMed ID: 31766855
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models.
    Husmeier D
    Bioinformatics; 2005 Sep; 21 Suppl 2():ii166-72. PubMed ID: 16204097
    [TBL] [Abstract][Full Text] [Related]  

  • 10. An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1.
    Kosakovsky Pond SL; Posada D; Stawiski E; Chappey C; Poon AF; Hughes G; Fearnhill E; Gravenor MB; Leigh Brown AJ; Frost SD
    PLoS Comput Biol; 2009 Nov; 5(11):e1000581. PubMed ID: 19956739
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin.
    Gao F; Robertson DL; Morrison SG; Hui H; Craig S; Decker J; Fultz PN; Girard M; Shaw GM; Hahn BH; Sharp PM
    J Virol; 1996 Oct; 70(10):7013-29. PubMed ID: 8794346
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Sequencing and phylogenetic analysis of near full-length HIV-1 subtypes A, B, G and unique recombinant AC and AD viral strains identified in South Africa.
    Wilkinson E; Holzmayer V; Jacobs GB; de Oliveira T; Brennan CA; Hackett J; van Rensburg EJ; Engelbrecht S
    AIDS Res Hum Retroviruses; 2015 Apr; 31(4):412-20. PubMed ID: 25492033
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Near Full-Length Genomic Characterization of a Novel CRF 01_AE/C Recombinant from Western India.
    Karade S; Pandey S; Gianchandani S; Kurle SN; Ghate M; Gaikwad NS; Rewari BB; Gangakhedkar RR
    AIDS Res Hum Retroviruses; 2015 Dec; 31(12):1269-73. PubMed ID: 26323027
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Molecular characterization of HIV type 1 among HIV-infected respondents in a cohort being prepared for HIV Phase III vaccine clinical trials, Western Kenya.
    Oyaro M; Mbithi J; Oyugi F; Laten A; Anzala O; Engelbrecht S
    AIDS Res Hum Retroviruses; 2011 Mar; 27(3):257-64. PubMed ID: 20950148
    [TBL] [Abstract][Full Text] [Related]  

  • 15. HIV type 1 CRF13_cpx revisited: identification of a new sequence from Cameroon and signal for subsubtype J2.
    Zhang M; Wilbe K; Wolfe ND; Gaschen B; Carr JK; Leitner T
    AIDS Res Hum Retroviruses; 2005 Nov; 21(11):955-60. PubMed ID: 16386113
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genetic and functional characterization of human immunodeficiency virus type 1 VprC variants from north India: presence of unique recombinants with mosaic genomes from B, C and D subtypes within the open reading frame of Vpr.
    Bano AS; Sood V; Neogi U; Goel N; Kuttiat VS; Wanchu A; Banerjea AC
    J Gen Virol; 2009 Nov; 90(Pt 11):2768-2776. PubMed ID: 19605589
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Genetic characterization of HIV-1 BC recombinants and evolutionary history of the CRF31_BC in Southern Brazil.
    Passaes CP; Bello G; Lorete RS; Matos Almeida SE; Junqueira DM; Veloso VG; Morgado MG; Guimarães ML
    Infect Genet Evol; 2009 Jul; 9(4):474-82. PubMed ID: 19460312
    [TBL] [Abstract][Full Text] [Related]  

  • 18. HIV classification using the coalescent theory.
    Bulla I; Schultz AK; Schreiber F; Zhang M; Leitner T; Korber B; Morgenstern B; Stanke M
    Bioinformatics; 2010 Jun; 26(11):1409-15. PubMed ID: 20400454
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Phylogenetic detection of recombination with a Bayesian prior on the distance between trees.
    Martins Lde O; Leal E; Kishino H
    PLoS One; 2008 Jul; 3(7):e2651. PubMed ID: 18612422
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Sequence variability of the integrase protein from a diverse collection of HIV type 1 isolates representing several subtypes.
    Burns CC; Gleason LM; Mozaffarian A; Giachetti C; Carr JK; Overbaugh J
    AIDS Res Hum Retroviruses; 2002 Sep; 18(14):1031-41. PubMed ID: 12396455
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.