These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

215 related articles for article (PubMed ID: 19454035)

  • 1. Improving protein structure similarity searches using domain boundaries based on conserved sequence information.
    Thompson KE; Wang Y; Madej T; Bryant SH
    BMC Struct Biol; 2009 May; 9():33. PubMed ID: 19454035
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CDD: a curated Entrez database of conserved domain alignments.
    Marchler-Bauer A; Anderson JB; DeWeese-Scott C; Fedorova ND; Geer LY; He S; Hurwitz DI; Jackson JD; Jacobs AR; Lanczycki CJ; Liebert CA; Liu C; Madej T; Marchler GH; Mazumder R; Nikolskaya AN; Panchenko AR; Rao BS; Shoemaker BA; Simonyan V; Song JS; Thiessen PA; Vasudevan S; Wang Y; Yamashita RA; Yin JJ; Bryant SH
    Nucleic Acids Res; 2003 Jan; 31(1):383-7. PubMed ID: 12520028
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Accuracy of structure-based sequence alignment of automatic methods.
    Kim C; Lee B
    BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866
    [TBL] [Abstract][Full Text] [Related]  

  • 4. HMMerThread: detecting remote, functional conserved domains in entire genomes by combining relaxed sequence-database searches with fold recognition.
    Bradshaw CR; Surendranath V; Henschel R; Mueller MS; Habermann BH
    PLoS One; 2011 Mar; 6(3):e17568. PubMed ID: 21423752
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CORAL: aligning conserved core regions across domain families.
    Fong JH; Marchler-Bauer A
    Bioinformatics; 2009 Aug; 25(15):1862-8. PubMed ID: 19470584
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CDD: a Conserved Domain Database for protein classification.
    Marchler-Bauer A; Anderson JB; Cherukuri PF; DeWeese-Scott C; Geer LY; Gwadz M; He S; Hurwitz DI; Jackson JD; Ke Z; Lanczycki CJ; Liebert CA; Liu C; Lu F; Marchler GH; Mullokandov M; Shoemaker BA; Simonyan V; Song JS; Thiessen PA; Yamashita RA; Yin JJ; Zhang D; Bryant SH
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D192-6. PubMed ID: 15608175
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CDD: specific functional annotation with the Conserved Domain Database.
    Marchler-Bauer A; Anderson JB; Chitsaz F; Derbyshire MK; DeWeese-Scott C; Fong JH; Geer LY; Geer RC; Gonzales NR; Gwadz M; He S; Hurwitz DI; Jackson JD; Ke Z; Lanczycki CJ; Liebert CA; Liu C; Lu F; Lu S; Marchler GH; Mullokandov M; Song JS; Tasneem A; Thanki N; Yamashita RA; Zhang D; Zhang N; Bryant SH
    Nucleic Acids Res; 2009 Jan; 37(Database issue):D205-10. PubMed ID: 18984618
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CDD: a conserved domain database for interactive domain family analysis.
    Marchler-Bauer A; Anderson JB; Derbyshire MK; DeWeese-Scott C; Gonzales NR; Gwadz M; Hao L; He S; Hurwitz DI; Jackson JD; Ke Z; Krylov D; Lanczycki CJ; Liebert CA; Liu C; Lu F; Lu S; Marchler GH; Mullokandov M; Song JS; Thanki N; Yamashita RA; Yin JJ; Zhang D; Bryant SH
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D237-40. PubMed ID: 17135202
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Protein domain identification and improved sequence similarity searching using PSI-BLAST.
    George RA; Heringa J
    Proteins; 2002 Sep; 48(4):672-81. PubMed ID: 12211035
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Rapid similarity search of proteins using alignments of domain arrangements.
    Terrapon N; Weiner J; Grath S; Moore AD; Bornberg-Bauer E
    Bioinformatics; 2014 Jan; 30(2):274-81. PubMed ID: 23828785
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Comparison of sequence and structure alignments for protein domains.
    Marchler-Bauer A; Panchenko AR; Ariel N; Bryant SH
    Proteins; 2002 Aug; 48(3):439-46. PubMed ID: 12112669
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MMDB and VAST+: tracking structural similarities between macromolecular complexes.
    Madej T; Lanczycki CJ; Zhang D; Thiessen PA; Geer RC; Marchler-Bauer A; Bryant SH
    Nucleic Acids Res; 2014 Jan; 42(Database issue):D297-303. PubMed ID: 24319143
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A structure-based method for protein sequence alignment.
    Kann MG; Thiessen PA; Panchenko AR; Schäffer AA; Altschul SF; Bryant SH
    Bioinformatics; 2005 Apr; 21(8):1451-6. PubMed ID: 15613392
    [TBL] [Abstract][Full Text] [Related]  

  • 14. CDD: NCBI's conserved domain database.
    Marchler-Bauer A; Derbyshire MK; Gonzales NR; Lu S; Chitsaz F; Geer LY; Geer RC; He J; Gwadz M; Hurwitz DI; Lanczycki CJ; Lu F; Marchler GH; Song JS; Thanki N; Wang Z; Yamashita RA; Zhang D; Zheng C; Bryant SH
    Nucleic Acids Res; 2015 Jan; 43(Database issue):D222-6. PubMed ID: 25414356
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CDART: protein homology by domain architecture.
    Geer LY; Domrachev M; Lipman DJ; Bryant SH
    Genome Res; 2002 Oct; 12(10):1619-23. PubMed ID: 12368255
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Exploratory visual analysis of conserved domains on multiple sequence alignments.
    Jankun-Kelly TJ; Lindeman AD; Bridges SM
    BMC Bioinformatics; 2009 Oct; 10 Suppl 11(Suppl 11):S7. PubMed ID: 19811691
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Structure-Based Sequence Alignment of the Transmembrane Domains of All Human GPCRs: Phylogenetic, Structural and Functional Implications.
    Cvicek V; Goddard WA; Abrol R
    PLoS Comput Biol; 2016 Mar; 12(3):e1004805. PubMed ID: 27028541
    [TBL] [Abstract][Full Text] [Related]  

  • 18. NCBI's Conserved Domain Database and Tools for Protein Domain Analysis.
    Yang M; Derbyshire MK; Yamashita RA; Marchler-Bauer A
    Curr Protoc Bioinformatics; 2020 Mar; 69(1):e90. PubMed ID: 31851420
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CDD: conserved domains and protein three-dimensional structure.
    Marchler-Bauer A; Zheng C; Chitsaz F; Derbyshire MK; Geer LY; Geer RC; Gonzales NR; Gwadz M; Hurwitz DI; Lanczycki CJ; Lu F; Lu S; Marchler GH; Song JS; Thanki N; Yamashita RA; Zhang D; Bryant SH
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D348-52. PubMed ID: 23197659
    [TBL] [Abstract][Full Text] [Related]  

  • 20. CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures.
    Redfern OC; Harrison A; Dallman T; Pearl FM; Orengo CA
    PLoS Comput Biol; 2007 Nov; 3(11):e232. PubMed ID: 18052539
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.