These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

223 related articles for article (PubMed ID: 19465397)

  • 1. HotSpot Wizard: a web server for identification of hot spots in protein engineering.
    Pavelka A; Chovancova E; Damborsky J
    Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W376-83. PubMed ID: 19465397
    [TBL] [Abstract][Full Text] [Related]  

  • 2. HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering.
    Bendl J; Stourac J; Sebestova E; Vavra O; Musil M; Brezovsky J; Damborsky J
    Nucleic Acids Res; 2016 Jul; 44(W1):W479-87. PubMed ID: 27174934
    [TBL] [Abstract][Full Text] [Related]  

  • 3. HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information.
    Sumbalova L; Stourac J; Martinek T; Bednar D; Damborsky J
    Nucleic Acids Res; 2018 Jul; 46(W1):W356-W362. PubMed ID: 29796670
    [TBL] [Abstract][Full Text] [Related]  

  • 4. FireProt: web server for automated design of thermostable proteins.
    Musil M; Stourac J; Bendl J; Brezovsky J; Prokop Z; Zendulka J; Martinek T; Bednar D; Damborsky J
    Nucleic Acids Res; 2017 Jul; 45(W1):W393-W399. PubMed ID: 28449074
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Fully automated virtual screening pipeline of FDA-approved drugs using Caver Web.
    Musil M; Jezik A; Jankujova M; Stourac J; Galgonek J; Mustafa Eyrilmez S; Vondrasek J; Damborsky J; Bednar D
    Comput Struct Biotechnol J; 2022; 20():6512-6518. PubMed ID: 36467577
    [TBL] [Abstract][Full Text] [Related]  

  • 6. NewProt - a protein engineering portal.
    Schwarte A; Genz M; Skalden L; Nobili A; Vickers C; Melse O; Kuipers R; Joosten HJ; Stourac J; Bendl J; Black J; Haase P; Baakman C; Damborsky J; Bornscheuer U; Vriend G; Venselaar H
    Protein Eng Des Sel; 2017 Jun; 30(6):441-447. PubMed ID: 28475759
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport.
    Stourac J; Vavra O; Kokkonen P; Filipovic J; Pinto G; Brezovsky J; Damborsky J; Bednar D
    Nucleic Acids Res; 2019 Jul; 47(W1):W414-W422. PubMed ID: 31114897
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Presaging critical residues in protein interfaces-web server (PCRPi-W): a web server to chart hot spots in protein interfaces.
    Segura Mora J; Assi SA; Fernandez-Fuentes N
    PLoS One; 2010 Aug; 5(8):e12352. PubMed ID: 20808810
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The visualCMAT: A web-server to select and interpret correlated mutations/co-evolving residues in protein families.
    Suplatov D; Sharapova Y; Timonina D; Kopylov K; Švedas V
    J Bioinform Comput Biol; 2018 Apr; 16(2):1840005. PubMed ID: 29361894
    [TBL] [Abstract][Full Text] [Related]  

  • 10. EzMol: A Web Server Wizard for the Rapid Visualization and Image Production of Protein and Nucleic Acid Structures.
    Reynolds CR; Islam SA; Sternberg MJE
    J Mol Biol; 2018 Jul; 430(15):2244-2248. PubMed ID: 29391170
    [TBL] [Abstract][Full Text] [Related]  

  • 11. LoopGrafter: a web tool for transplanting dynamical loops for protein engineering.
    Planas-Iglesias J; Opaleny F; Ulbrich P; Stourac J; Sanusi Z; Pinto GP; Schenkmayerova A; Byska J; Damborsky J; Kozlikova B; Bednar D
    Nucleic Acids Res; 2022 Jul; 50(W1):W465-W473. PubMed ID: 35438789
    [TBL] [Abstract][Full Text] [Related]  

  • 12. DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins.
    Tan KP; Varadarajan R; Madhusudhan MS
    Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W242-8. PubMed ID: 21576233
    [TBL] [Abstract][Full Text] [Related]  

  • 13. HotPoint: hot spot prediction server for protein interfaces.
    Tuncbag N; Keskin O; Gursoy A
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W402-6. PubMed ID: 20444871
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Automated Design of Efficient and Functionally Diverse Enzyme Repertoires.
    Khersonsky O; Lipsh R; Avizemer Z; Ashani Y; Goldsmith M; Leader H; Dym O; Rogotner S; Trudeau DL; Prilusky J; Amengual-Rigo P; Guallar V; Tawfik DS; Fleishman SJ
    Mol Cell; 2018 Oct; 72(1):178-186.e5. PubMed ID: 30270109
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Identification of tunnels in proteins, nucleic acids, inorganic materials and molecular ensembles.
    Damborský J; Petrek M; Banás P; Otyepka M
    Biotechnol J; 2007 Jan; 2(1):62-7. PubMed ID: 17183511
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Impact of the access tunnel engineering on catalysis is strictly ligand-specific.
    Kaushik S; Marques SM; Khirsariya P; Paruch K; Libichova L; Brezovsky J; Prokop Z; Chaloupkova R; Damborsky J
    FEBS J; 2018 Apr; 285(8):1456-1476. PubMed ID: 29478278
    [TBL] [Abstract][Full Text] [Related]  

  • 17. CD-HIT Suite: a web server for clustering and comparing biological sequences.
    Huang Y; Niu B; Gao Y; Fu L; Li W
    Bioinformatics; 2010 Mar; 26(5):680-2. PubMed ID: 20053844
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Engineering Proteins for Thermostability with iRDP Web Server.
    Panigrahi P; Sule M; Ghanate A; Ramasamy S; Suresh CG
    PLoS One; 2015; 10(10):e0139486. PubMed ID: 26436543
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PMUT: a web-based tool for the annotation of pathological mutations on proteins.
    Ferrer-Costa C; Gelpí JL; Zamakola L; Parraga I; de la Cruz X; Orozco M
    Bioinformatics; 2005 Jul; 21(14):3176-8. PubMed ID: 15879453
    [TBL] [Abstract][Full Text] [Related]  

  • 20. CCRXP: exploring clusters of conserved residues in protein structures.
    Ahmad S; Keskin O; Mizuguchi K; Sarai A; Nussinov R
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W398-401. PubMed ID: 20457748
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.