475 related articles for article (PubMed ID: 19497936)
1. ABACAS: algorithm-based automatic contiguation of assembled sequences.
Assefa S; Keane TM; Otto TD; Newbold C; Berriman M
Bioinformatics; 2009 Aug; 25(15):1968-9. PubMed ID: 19497936
[TBL] [Abstract][Full Text] [Related]
2. Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools.
Kisand V; Lettieri T
BMC Genomics; 2013 Apr; 14():211. PubMed ID: 23547799
[TBL] [Abstract][Full Text] [Related]
3. CAR: contig assembly of prokaryotic draft genomes using rearrangements.
Lu CL; Chen KT; Huang SY; Chiu HT
BMC Bioinformatics; 2014 Nov; 15(1):381. PubMed ID: 25431302
[TBL] [Abstract][Full Text] [Related]
4. GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads.
Chu C; Li X; Wu Y
BMC Genomics; 2019 Jun; 20(Suppl 5):426. PubMed ID: 31167639
[TBL] [Abstract][Full Text] [Related]
5. AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references.
Bao E; Jiang T; Girke T
Bioinformatics; 2014 Jun; 30(12):i319-i328. PubMed ID: 24932000
[TBL] [Abstract][Full Text] [Related]
6. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
Cherukuri Y; Janga SC
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636
[TBL] [Abstract][Full Text] [Related]
7. Blue: correcting sequencing errors using consensus and context.
Greenfield P; Duesing K; Papanicolaou A; Bauer DC
Bioinformatics; 2014 Oct; 30(19):2723-32. PubMed ID: 24919879
[TBL] [Abstract][Full Text] [Related]
8. Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads.
Huson DH; Tappu R; Bazinet AL; Xie C; Cummings MP; Nieselt K; Williams R
Microbiome; 2017 Jan; 5(1):11. PubMed ID: 28122610
[TBL] [Abstract][Full Text] [Related]
9. Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies.
Boisvert S; Laviolette F; Corbeil J
J Comput Biol; 2010 Nov; 17(11):1519-33. PubMed ID: 20958248
[TBL] [Abstract][Full Text] [Related]
10. LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly.
Xu GC; Xu TJ; Zhu R; Zhang Y; Li SQ; Wang HW; Li JT
Gigascience; 2019 Jan; 8(1):. PubMed ID: 30576505
[TBL] [Abstract][Full Text] [Related]
11. OSLay: optimal syntenic layout of unfinished assemblies.
Richter DC; Schuster SC; Huson DH
Bioinformatics; 2007 Jul; 23(13):1573-9. PubMed ID: 17463020
[TBL] [Abstract][Full Text] [Related]
12. The Sequence Alignment/Map format and SAMtools.
Li H; Handsaker B; Wysoker A; Fennell T; Ruan J; Homer N; Marth G; Abecasis G; Durbin R;
Bioinformatics; 2009 Aug; 25(16):2078-9. PubMed ID: 19505943
[TBL] [Abstract][Full Text] [Related]
13. Methods for the detection and assembly of novel sequence in high-throughput sequencing data.
Holtgrewe M; Kuchenbecker L; Reinert K
Bioinformatics; 2015 Jun; 31(12):1904-12. PubMed ID: 25649620
[TBL] [Abstract][Full Text] [Related]
14. An algorithm for automated closure during assembly.
Koren S; Miller JR; Walenz BP; Sutton G
BMC Bioinformatics; 2010 Sep; 11():457. PubMed ID: 20831800
[TBL] [Abstract][Full Text] [Related]
15. Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences.
Utturkar SM; Klingeman DM; Land ML; Schadt CW; Doktycz MJ; Pelletier DA; Brown SD
Bioinformatics; 2014 Oct; 30(19):2709-16. PubMed ID: 24930142
[TBL] [Abstract][Full Text] [Related]
16. Comparing de novo genome assembly: the long and short of it.
Narzisi G; Mishra B
PLoS One; 2011 Apr; 6(4):e19175. PubMed ID: 21559467
[TBL] [Abstract][Full Text] [Related]
17. Mapping contigs using CONTIGuator.
Galardini M; Mengoni A; Bazzicalupo M
Methods Mol Biol; 2015; 1231():163-76. PubMed ID: 25343865
[TBL] [Abstract][Full Text] [Related]
18. Misassembly detection using paired-end sequence reads and optical mapping data.
Muggli MD; Puglisi SJ; Ronen R; Boucher C
Bioinformatics; 2015 Jun; 31(12):i80-8. PubMed ID: 26072512
[TBL] [Abstract][Full Text] [Related]
19. Using paired-end sequences to optimise parameters for alignment of sequence reads against related genomes.
Ratnakumar A; McWilliam S; Barris W; Dalrymple BP
BMC Genomics; 2010 Aug; 11():458. PubMed ID: 20678236
[TBL] [Abstract][Full Text] [Related]
20. Aggressive assembly of pyrosequencing reads with mates.
Miller JR; Delcher AL; Koren S; Venter E; Walenz BP; Brownley A; Johnson J; Li K; Mobarry C; Sutton G
Bioinformatics; 2008 Dec; 24(24):2818-24. PubMed ID: 18952627
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]