BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

108 related articles for article (PubMed ID: 19507290)

  • 1. Iterative non-sequential protein structural alignment.
    Salem S; Zaki MJ; Bystroff C
    J Bioinform Comput Biol; 2009 Jun; 7(3):571-96. PubMed ID: 19507290
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Iterative non-sequential protein structural alignment.
    Salem S; Zaki MJ
    Comput Syst Bioinformatics Conf; 2008; 7():183-94. PubMed ID: 19642279
    [TBL] [Abstract][Full Text] [Related]  

  • 3. FlexSnap: flexible non-sequential protein structure alignment.
    Salem S; Zaki MJ; Bystroff C
    Algorithms Mol Biol; 2010 Jan; 5():12. PubMed ID: 20047669
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Fast and accurate non-sequential protein structure alignment using a new asymmetric linear sum assignment heuristic.
    Brown P; Pullan W; Yang Y; Zhou Y
    Bioinformatics; 2016 Feb; 32(3):370-7. PubMed ID: 26454279
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comparative analysis of protein structure alignments.
    Mayr G; Domingues FS; Lackner P
    BMC Struct Biol; 2007 Jul; 7():50. PubMed ID: 17672887
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MICAN: a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, C(α) only models, Alternative alignments, and Non-sequential alignments.
    Minami S; Sawada K; Chikenji G
    BMC Bioinformatics; 2013 Jan; 14():24. PubMed ID: 23331634
    [TBL] [Abstract][Full Text] [Related]  

  • 7. mTM-align: an algorithm for fast and accurate multiple protein structure alignment.
    Dong R; Peng Z; Zhang Y; Yang J
    Bioinformatics; 2018 May; 34(10):1719-1725. PubMed ID: 29281009
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A novel method to compare protein structures using local descriptors.
    Daniluk P; Lesyng B
    BMC Bioinformatics; 2011 Aug; 12():344. PubMed ID: 21849047
    [TBL] [Abstract][Full Text] [Related]  

  • 9. FAST: a novel protein structure alignment algorithm.
    Zhu J; Weng Z
    Proteins; 2005 Feb; 58(3):618-27. PubMed ID: 15609341
    [TBL] [Abstract][Full Text] [Related]  

  • 10. CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area.
    Terashi G; Takeda-Shitaka M
    PLoS One; 2015; 10(10):e0141440. PubMed ID: 26502070
    [TBL] [Abstract][Full Text] [Related]  

  • 11. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
    Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
    BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SANA: an algorithm for sequential and non-sequential protein structure alignment.
    Wang L; Wu LY; Wang Y; Zhang XS; Chen L
    Amino Acids; 2010 Jul; 39(2):417-25. PubMed ID: 20127263
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CAALIGN: a program for pairwise and multiple protein-structure alignment.
    Oldfield TJ
    Acta Crystallogr D Biol Crystallogr; 2007 Apr; 63(Pt 4):514-25. PubMed ID: 17372357
    [TBL] [Abstract][Full Text] [Related]  

  • 14. 3D-blast: 3D protein structure alignment, comparison, and classification using spherical polar Fourier correlations.
    Mavridis L; Ritchie DW
    Pac Symp Biocomput; 2010; ():281-92. PubMed ID: 19908380
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Non-sequential protein structure alignment by conformational space annealing and local refinement.
    Joung I; Kim JY; Joo K; Lee J
    PLoS One; 2019; 14(1):e0210177. PubMed ID: 30699145
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Representing and comparing protein folds and fold families using three-dimensional shape-density representations.
    Mavridis L; Ghoorah AW; Venkatraman V; Ritchie DW
    Proteins; 2012 Feb; 80(2):530-45. PubMed ID: 22081520
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SAS-Pro: simultaneous residue assignment and structure superposition for protein structure alignment.
    Shah SB; Sahinidis NV
    PLoS One; 2012; 7(5):e37493. PubMed ID: 22662161
    [TBL] [Abstract][Full Text] [Related]  

  • 18. LS-align: an atom-level, flexible ligand structural alignment algorithm for high-throughput virtual screening.
    Hu J; Liu Z; Yu DJ; Zhang Y
    Bioinformatics; 2018 Jul; 34(13):2209-2218. PubMed ID: 29462237
    [TBL] [Abstract][Full Text] [Related]  

  • 19. From analysis of protein structural alignments toward a novel approach to align protein sequences.
    Sunyaev SR; Bogopolsky GA; Oleynikova NV; Vlasov PK; Finkelstein AV; Roytberg MA
    Proteins; 2004 Feb; 54(3):569-82. PubMed ID: 14748004
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Search similar protein structures with classification, sequence and 3d alignments.
    Lu Z; Zhao Z; Garcia S; Krishnaswamy K; Fu B
    J Bioinform Comput Biol; 2009 Oct; 7(5):755-71. PubMed ID: 19785044
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.