884 related articles for article (PubMed ID: 19507836)
1. Hydration free energies of amino acids: why side chain analog data are not enough.
König G; Boresch S
J Phys Chem B; 2009 Jul; 113(26):8967-74. PubMed ID: 19507836
[TBL] [Abstract][Full Text] [Related]
2. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
Avbelj F
J Mol Biol; 2000 Jul; 300(5):1335-59. PubMed ID: 10903873
[TBL] [Abstract][Full Text] [Related]
3. Solvation free energies of amino acid side chain analogs for common molecular mechanics water models.
Shirts MR; Pande VS
J Chem Phys; 2005 Apr; 122(13):134508. PubMed ID: 15847482
[TBL] [Abstract][Full Text] [Related]
4. Solvation free energy of amino acids and side-chain analogues.
Chang J; Lenhoff AM; Sandler SI
J Phys Chem B; 2007 Mar; 111(8):2098-106. PubMed ID: 17269814
[TBL] [Abstract][Full Text] [Related]
5. Solvation energies of amino acid side chains and backbone in a family of host-guest pentapeptides.
Wimley WC; Creamer TP; White SH
Biochemistry; 1996 Apr; 35(16):5109-24. PubMed ID: 8611495
[TBL] [Abstract][Full Text] [Related]
6. Free energy landscape of protein folding in water: explicit vs. implicit solvent.
Zhou R
Proteins; 2003 Nov; 53(2):148-61. PubMed ID: 14517967
[TBL] [Abstract][Full Text] [Related]
7. Free energy profiles of amino acid side chain analogs near water-vapor interface obtained via MD simulations.
Shaytan AK; Ivanov VA; Shaitan KV; Khokhlov AR
J Comput Chem; 2010 Jan; 31(1):204-16. PubMed ID: 19421988
[TBL] [Abstract][Full Text] [Related]
8. Absolute hydration free energies of blocked amino acids: implications for protein solvation and stability.
König G; Bruckner S; Boresch S
Biophys J; 2013 Jan; 104(2):453-62. PubMed ID: 23442867
[TBL] [Abstract][Full Text] [Related]
9. Calculation of the free energy of solvation for neutral analogs of amino acid side chains.
Villa A; Mark AE
J Comput Chem; 2002 Apr; 23(5):548-53. PubMed ID: 11948581
[TBL] [Abstract][Full Text] [Related]
10. Coupling nonpolar and polar solvation free energies in implicit solvent models.
Dzubiella J; Swanson JM; McCammon JA
J Chem Phys; 2006 Feb; 124(8):084905. PubMed ID: 16512740
[TBL] [Abstract][Full Text] [Related]
11. Are solvation free energies of homogeneous helical peptides additive?
Staritzbichler R; Gu W; Helms V
J Phys Chem B; 2005 Oct; 109(40):19000-7. PubMed ID: 16853446
[TBL] [Abstract][Full Text] [Related]
12. Hydration in discrete water. A mean field, cellular automata based approach to calculating hydration free energies.
Setny P; Zacharias M
J Phys Chem B; 2010 Jul; 114(26):8667-75. PubMed ID: 20552986
[TBL] [Abstract][Full Text] [Related]
13. Parameterization of the Hamiltonian Dielectric Solvent (HADES) Reaction-Field Method for the Solvation Free Energies of Amino Acid Side-Chain Analogs.
Zachmann M; Mathias G; Antes I
Chemphyschem; 2015 Jun; 16(8):1739-49. PubMed ID: 25820235
[TBL] [Abstract][Full Text] [Related]
14. The SGB/NP hydration free energy model based on the surface generalized born solvent reaction field and novel nonpolar hydration free energy estimators.
Gallicchio E; Zhang LY; Levy RM
J Comput Chem; 2002 Apr; 23(5):517-29. PubMed ID: 11948578
[TBL] [Abstract][Full Text] [Related]
15. Modeling loop reorganization free energies of acetylcholinesterase: a comparison of explicit and implicit solvent models.
Olson MA
Proteins; 2004 Dec; 57(4):645-50. PubMed ID: 15481087
[TBL] [Abstract][Full Text] [Related]
16. Solvation thermodynamics of amino acid side chains on a short peptide backbone.
Hajari T; van der Vegt NF
J Chem Phys; 2015 Apr; 142(14):144502. PubMed ID: 25877585
[TBL] [Abstract][Full Text] [Related]
17. The importance of excluded solvent volume effects in computing hydration free energies.
Yang PK; Lim C
J Phys Chem B; 2008 Nov; 112(47):14863-8. PubMed ID: 18956834
[TBL] [Abstract][Full Text] [Related]
18. Determination of atomic desolvation energies from the structures of crystallized proteins.
Zhang C; Vasmatzis G; Cornette JL; DeLisi C
J Mol Biol; 1997 Apr; 267(3):707-26. PubMed ID: 9126848
[TBL] [Abstract][Full Text] [Related]
19. Force field evaluation for biomolecular simulation: free enthalpies of solvation of polar and apolar compounds in various solvents.
Geerke DP; van Gunsteren WF
Chemphyschem; 2006 Mar; 7(3):671-8. PubMed ID: 16514695
[TBL] [Abstract][Full Text] [Related]
20. The treatment of solvation by a generalized Born model and a self-consistent charge-density functional theory-based tight-binding method.
Xie L; Liu H
J Comput Chem; 2002 Nov; 23(15):1404-15. PubMed ID: 12370943
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]