These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

109 related articles for article (PubMed ID: 19522663)

  • 21. Comparing folding codes for proteins and polymers.
    Chan HS; Dill KA
    Proteins; 1996 Mar; 24(3):335-44. PubMed ID: 8778780
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Effective interactions cannot replace solvent effects in a lattice model of proteins.
    Salvi G; De Los Rios P
    Phys Rev Lett; 2003 Dec; 91(25):258102. PubMed ID: 14754161
    [TBL] [Abstract][Full Text] [Related]  

  • 23. An effective exact algorithm and a new upper bound for the number of contacts in the hydrophobic-polar two-dimensional lattice model.
    Giaquinta E; Pozzi L
    J Comput Biol; 2013 Aug; 20(8):593-609. PubMed ID: 23899013
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Improving coarse-grained models of protein folding through weighting of polar-polar/hydrophobic-hydrophobic interactions into crowded spaces.
    Beltrán HI; Alas-Guardado SJ; González-Pérez PP
    J Mol Model; 2022 Mar; 28(4):87. PubMed ID: 35262807
    [TBL] [Abstract][Full Text] [Related]  

  • 25. A branch and bound algorithm for the protein folding problem in the HP lattice model.
    Chen M; Huang WQ
    Genomics Proteomics Bioinformatics; 2005 Nov; 3(4):225-30. PubMed ID: 16689690
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Designability of protein structures: a lattice-model study using the Miyazawa-Jernigan matrix.
    Li H; Tang C; Wingreen NS
    Proteins; 2002 Nov; 49(3):403-12. PubMed ID: 12360530
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Emergence of highly designable protein-backbone conformations in an off-lattice model.
    Miller J; Zeng C; Wingreen NS; Tang C
    Proteins; 2002 Jun; 47(4):506-12. PubMed ID: 12001229
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Folding pathway dependence on energetic frustration and interaction heterogeneity for a three-dimensional hydrophobic protein model.
    Garcia LG; Araújo AF
    Proteins; 2006 Jan; 62(1):46-63. PubMed ID: 16292745
    [TBL] [Abstract][Full Text] [Related]  

  • 29. A simple lattice model that exhibits a protein-like cooperative all-or-none folding transition.
    Kolinski A; Gront D; Pokarowski P; Skolnick J
    Biopolymers; 2003 Jul; 69(3):399-405. PubMed ID: 12833266
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Protein design with L- and D-alpha-amino acid structures as the alphabet.
    Durani S
    Acc Chem Res; 2008 Oct; 41(10):1301-8. PubMed ID: 18642934
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Distance-dependent hydrophobic-hydrophobic contacts in protein folding simulations.
    Onofrio A; Parisi G; Punzi G; Todisco S; Di Noia MA; Bossis F; Turi A; De Grassi A; Pierri CL
    Phys Chem Chem Phys; 2014 Sep; 16(35):18907-17. PubMed ID: 25083519
    [TBL] [Abstract][Full Text] [Related]  

  • 32. A Novel Branch-and-Bound Algorithm for the Protein Folding Problem in the 3D HP Model.
    Chou HH; Hsu CT; Chen LH; Lin YC; Hsieh SY
    IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(2):455-462. PubMed ID: 31403440
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of a lattice model.
    Mirny LA; Abkevich V; Shakhnovich EI
    Fold Des; 1996; 1(2):103-16. PubMed ID: 9079370
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Unique optimal foldings of proteins on a triangular lattice.
    Li Z; Zhang X; Chen L
    Appl Bioinformatics; 2005; 4(2):105-16. PubMed ID: 16128612
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Computational Modeling of Proteins based on Cellular Automata: A Method of HP Folding Approximation.
    Madain A; Abu Dalhoum AL; Sleit A
    Protein J; 2018 Jun; 37(3):248-260. PubMed ID: 29802509
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Optimized Wang-Landau sampling of lattice polymers: ground state search and folding thermodynamics of HP model proteins.
    Wüst T; Landau DP
    J Chem Phys; 2012 Aug; 137(6):064903. PubMed ID: 22897307
    [TBL] [Abstract][Full Text] [Related]  

  • 37. A New Heuristic Algorithm for Protein Folding in the HP Model.
    Traykov M; Angelov S; Yanev N
    J Comput Biol; 2016 Aug; 23(8):662-8. PubMed ID: 27153764
    [TBL] [Abstract][Full Text] [Related]  

  • 38. On Stable States in a Topologically Driven Protein Folding Model.
    Dai Z; Becerra D; Waldispühl J
    J Comput Biol; 2017 Sep; 24(9):851-862. PubMed ID: 28632429
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Particle swarm optimization approach for protein structure prediction in the 3D HP model.
    Mansour N; Kanj F; Khachfe H
    Interdiscip Sci; 2012 Sep; 4(3):190-200. PubMed ID: 23292692
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Local interactions in protein folding determined through an inverse folding model.
    Bastolla U; Porto M; Ortíz AR
    Proteins; 2008 Apr; 71(1):278-99. PubMed ID: 17932940
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.