365 related articles for article (PubMed ID: 19523228)
1. Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing.
Mane SP; Evans C; Cooper KL; Crasta OR; Folkerts O; Hutchison SK; Harkins TT; Thierry-Mieg D; Thierry-Mieg J; Jensen RV
BMC Genomics; 2009 Jun; 10():264. PubMed ID: 19523228
[TBL] [Abstract][Full Text] [Related]
2. Evaluation of gene expression data generated from expired Affymetrix GeneChip® microarrays using MAQC reference RNA samples.
Wen Z; Wang C; Shi Q; Huang Y; Su Z; Hong H; Tong W; Shi L
BMC Bioinformatics; 2010 Oct; 11 Suppl 6(Suppl 6):S10. PubMed ID: 20946593
[TBL] [Abstract][Full Text] [Related]
3. Differentially expressed alternatively spliced genes in malignant pleural mesothelioma identified using massively parallel transcriptome sequencing.
Dong L; Jensen RV; De Rienzo A; Gordon GJ; Xu Y; Sugarbaker DJ; Bueno R
BMC Med Genet; 2009 Dec; 10():149. PubMed ID: 20043850
[TBL] [Abstract][Full Text] [Related]
4. Cross-platform comparison of SYBR Green real-time PCR with TaqMan PCR, microarrays and other gene expression measurement technologies evaluated in the MicroArray Quality Control (MAQC) study.
Arikawa E; Sun Y; Wang J; Zhou Q; Ning B; Dial SL; Guo L; Yang J
BMC Genomics; 2008 Jul; 9():328. PubMed ID: 18620571
[TBL] [Abstract][Full Text] [Related]
5. 3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer.
Asmann YW; Klee EW; Thompson EA; Perez EA; Middha S; Oberg AL; Therneau TM; Smith DI; Poland GA; Wieben ED; Kocher JP
BMC Genomics; 2009 Nov; 10():531. PubMed ID: 19917133
[TBL] [Abstract][Full Text] [Related]
6. Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data.
Chen JJ; Hsueh HM; Delongchamp RR; Lin CJ; Tsai CA
BMC Bioinformatics; 2007 Oct; 8():412. PubMed ID: 17961233
[TBL] [Abstract][Full Text] [Related]
7. Comparison of next generation sequencing technologies for transcriptome characterization.
Wall PK; Leebens-Mack J; Chanderbali AS; Barakat A; Wolcott E; Liang H; Landherr L; Tomsho LP; Hu Y; Carlson JE; Ma H; Schuster SC; Soltis DE; Soltis PS; Altman N; dePamphilis CW
BMC Genomics; 2009 Aug; 10():347. PubMed ID: 19646272
[TBL] [Abstract][Full Text] [Related]
8. Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome.
Fraser BA; Weadick CJ; Janowitz I; Rodd FH; Hughes KA
BMC Genomics; 2011 Apr; 12():202. PubMed ID: 21507250
[TBL] [Abstract][Full Text] [Related]
9. Gene set enrichment meta-learning analysis: next- generation sequencing versus microarrays.
Stiglic G; Bajgot M; Kokol P
BMC Bioinformatics; 2010 Apr; 11():176. PubMed ID: 20377890
[TBL] [Abstract][Full Text] [Related]
10. An optimized protocol for generation and analysis of Ion Proton sequencing reads for RNA-Seq.
Yuan Y; Xu H; Leung RK
BMC Genomics; 2016 May; 17():403. PubMed ID: 27229683
[TBL] [Abstract][Full Text] [Related]
11. RNA-Seq: a method for comprehensive transcriptome analysis.
Nagalakshmi U; Waern K; Snyder M
Curr Protoc Mol Biol; 2010 Jan; Chapter 4():Unit 4.11.1-13. PubMed ID: 20069539
[TBL] [Abstract][Full Text] [Related]
12. Accurate identification and analysis of human mRNA isoforms using deep long read sequencing.
Tilgner H; Raha D; Habegger L; Mohiuddin M; Gerstein M; Snyder M
G3 (Bethesda); 2013 Mar; 3(3):387-97. PubMed ID: 23450794
[TBL] [Abstract][Full Text] [Related]
13. Characterizing the mouse ES cell transcriptome with Illumina sequencing.
Rosenkranz R; Borodina T; Lehrach H; Himmelbauer H
Genomics; 2008 Oct; 92(4):187-94. PubMed ID: 18602984
[TBL] [Abstract][Full Text] [Related]
14. Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays.
Bottomly D; Walter NA; Hunter JE; Darakjian P; Kawane S; Buck KJ; Searles RP; Mooney M; McWeeney SK; Hitzemann R
PLoS One; 2011 Mar; 6(3):e17820. PubMed ID: 21455293
[TBL] [Abstract][Full Text] [Related]
15. On the importance of small changes in RNA expression.
St Laurent G; Shtokalo D; Tackett MR; Yang Z; Vyatkin Y; Milos PM; Seilheimer B; McCaffrey TA; Kapranov P
Methods; 2013 Sep; 63(1):18-24. PubMed ID: 23563143
[TBL] [Abstract][Full Text] [Related]
16. Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples.
Nacu S; Yuan W; Kan Z; Bhatt D; Rivers CS; Stinson J; Peters BA; Modrusan Z; Jung K; Seshagiri S; Wu TD
BMC Med Genomics; 2011 Jan; 4():11. PubMed ID: 21261984
[TBL] [Abstract][Full Text] [Related]
17. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
Johnson BK; Scholz MB; Teal TK; Abramovitch RB
BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
[TBL] [Abstract][Full Text] [Related]
18. Knowledge-based reconstruction of mRNA transcripts with short sequencing reads for transcriptome research.
Seok J; Xu W; Jiang H; Davis RW; Xiao W
PLoS One; 2012; 7(2):e31440. PubMed ID: 22312447
[TBL] [Abstract][Full Text] [Related]
19. Gene expression and isoform variation analysis using Affymetrix Exon Arrays.
Bemmo A; Benovoy D; Kwan T; Gaffney DJ; Jensen RV; Majewski J
BMC Genomics; 2008 Nov; 9():529. PubMed ID: 18990248
[TBL] [Abstract][Full Text] [Related]
20. JAGuaR: junction alignments to genome for RNA-seq reads.
Butterfield YS; Kreitzman M; Thiessen N; Corbett RD; Li Y; Pang J; Ma YP; Jones SJ; Birol İ
PLoS One; 2014; 9(7):e102398. PubMed ID: 25062255
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
