These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

185 related articles for article (PubMed ID: 19527491)

  • 1. Computing paths and cycles in biological interaction graphs.
    Klamt S; von Kamp A
    BMC Bioinformatics; 2009 Jun; 10():181. PubMed ID: 19527491
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A methodology for the structural and functional analysis of signaling and regulatory networks.
    Klamt S; Saez-Rodriguez J; Lindquist JA; Simeoni L; Gilles ED
    BMC Bioinformatics; 2006 Feb; 7():56. PubMed ID: 16464248
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Structural and functional analysis of cellular networks with CellNetAnalyzer.
    Klamt S; Saez-Rodriguez J; Gilles ED
    BMC Syst Biol; 2007 Jan; 1():2. PubMed ID: 17408509
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Assessing statistical significance in causal graphs.
    Chindelevitch L; Loh PR; Enayetallah A; Berger B; Ziemek D
    BMC Bioinformatics; 2012 Feb; 13():35. PubMed ID: 22348444
    [TBL] [Abstract][Full Text] [Related]  

  • 5. An application programming interface for CellNetAnalyzer.
    Klamt S; von Kamp A
    Biosystems; 2011 Aug; 105(2):162-8. PubMed ID: 21315797
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Detection of the dominant direction of information flow and feedback links in densely interconnected regulatory networks.
    Ispolatov I; Maslov S
    BMC Bioinformatics; 2008 Oct; 9():424. PubMed ID: 18842147
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Reconstruction of large-scale regulatory networks based on perturbation graphs and transitive reduction: improved methods and their evaluation.
    Pinna A; Heise S; Flassig RJ; de la Fuente A; Klamt S
    BMC Syst Biol; 2013 Aug; 7():73. PubMed ID: 23924435
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The Edge-Disjoint Path Problem on Random Graphs by Message-Passing.
    Altarelli F; Braunstein A; Dall'Asta L; De Bacco C; Franz S
    PLoS One; 2015; 10(12):e0145222. PubMed ID: 26710102
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Network Analysis Tools: from biological networks to clusters and pathways.
    Brohée S; Faust K; Lima-Mendez G; Vanderstocken G; van Helden J
    Nat Protoc; 2008; 3(10):1616-29. PubMed ID: 18802442
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Dynamic and structural constraints in signal propagation by regulatory networks.
    Estrada J; Guantes R
    Mol Biosyst; 2013 Feb; 9(2):268-84. PubMed ID: 23224050
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Algorithms for effective querying of compound graph-based pathway databases.
    Dogrusoz U; Cetintas A; Demir E; Babur O
    BMC Bioinformatics; 2009 Nov; 10():376. PubMed ID: 19917102
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PANET: a GPU-based tool for fast parallel analysis of robustness dynamics and feed-forward/feedback loop structures in large-scale biological networks.
    Trinh HC; Le DH; Kwon YK
    PLoS One; 2014; 9(7):e103010. PubMed ID: 25058310
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).
    Foffi G; Pastore A; Piazza F; Temussi PA
    Phys Biol; 2013 Aug; 10(4):040301. PubMed ID: 23912807
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A single source k-shortest paths algorithm to infer regulatory pathways in a gene network.
    Shih YK; Parthasarathy S
    Bioinformatics; 2012 Jun; 28(12):i49-58. PubMed ID: 22689778
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Pathway Analysis with Signaling Hypergraphs.
    Ritz A; Avent B; Murali TM
    IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(5):1042-1055. PubMed ID: 28991726
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Steiner tree methods for optimal sub-network identification: an empirical study.
    Sadeghi A; Fröhlich H
    BMC Bioinformatics; 2013 Apr; 14():144. PubMed ID: 23627667
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Algorithm for shortest path search in Geographic Information Systems by using reduced graphs.
    Rodríguez-Puente R; Lazo-Cortés MS
    Springerplus; 2013; 2():291. PubMed ID: 24010024
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Exploring biological interaction networks with tailored weighted quasi-bicliques.
    Chang WC; Vakati S; Krause R; Eulenstein O
    BMC Bioinformatics; 2012 Jun; 13 Suppl 10(Suppl 10):S16. PubMed ID: 22759421
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Growing Directed Acyclic Graphs: Optimization Functions for Pathway Reconstruction Algorithms.
    Köse TB; Li J; Ritz A
    J Comput Biol; 2023 Jul; 30(7):814-828. PubMed ID: 36862510
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Algorithmic approaches for computing elementary modes in large biochemical reaction networks.
    Klamt S; Gagneur J; von Kamp A
    Syst Biol (Stevenage); 2005 Dec; 152(4):249-55. PubMed ID: 16986267
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.