These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

129 related articles for article (PubMed ID: 19528088)

  • 1. InterMap3D: predicting and visualizing co-evolving protein residues.
    Gouveia-Oliveira R; Roque FS; Wernersson R; Sicheritz-Ponten T; Sackett PW; Mølgaard A; Pedersen AG
    Bioinformatics; 2009 Aug; 25(15):1963-5. PubMed ID: 19528088
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Using information theory to search for co-evolving residues in proteins.
    Martin LC; Gloor GB; Dunn SD; Wahl LM
    Bioinformatics; 2005 Nov; 21(22):4116-24. PubMed ID: 16159918
    [TBL] [Abstract][Full Text] [Related]  

  • 3. FeatureMap3D--a tool to map protein features and sequence conservation onto homologous structures in the PDB.
    Wernersson R; Rapacki K; Staerfeldt HH; Sackett PW; Mølgaard A
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W84-8. PubMed ID: 16845115
    [TBL] [Abstract][Full Text] [Related]  

  • 4. BioShell--a package of tools for structural biology computations.
    Gront D; Kolinski A
    Bioinformatics; 2006 Mar; 22(5):621-2. PubMed ID: 16407320
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The PDB-Preview database: a repository of in-silico models of 'on-hold' PDB entries.
    Fischer D; Paś J; Rychlewski L
    Bioinformatics; 2004 Oct; 20(15):2482-4. PubMed ID: 15073011
    [TBL] [Abstract][Full Text] [Related]  

  • 6. QSCOP-BLAST--fast retrieval of quantified structural information for protein sequences of unknown structure.
    Suhrer SJ; Gruber M; Sippl MJ
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W411-5. PubMed ID: 17478501
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Mapping PDB chains to UniProtKB entries.
    Martin AC
    Bioinformatics; 2005 Dec; 21(23):4297-301. PubMed ID: 16188924
    [TBL] [Abstract][Full Text] [Related]  

  • 8. DOMAC: an accurate, hybrid protein domain prediction server.
    Cheng J
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W354-6. PubMed ID: 17553833
    [TBL] [Abstract][Full Text] [Related]  

  • 9. AQUA: automated quality improvement for multiple sequence alignments.
    Muller J; Creevey CJ; Thompson JD; Arendt D; Bork P
    Bioinformatics; 2010 Jan; 26(2):263-5. PubMed ID: 19926669
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PROFbval: predict flexible and rigid residues in proteins.
    Schlessinger A; Yachdav G; Rost B
    Bioinformatics; 2006 Apr; 22(7):891-3. PubMed ID: 16455751
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Domain-based small molecule binding site annotation.
    Snyder KA; Feldman HJ; Dumontier M; Salama JJ; Hogue CW
    BMC Bioinformatics; 2006 Mar; 7():152. PubMed ID: 16545112
    [TBL] [Abstract][Full Text] [Related]  

  • 12. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
    Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
    BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MICAlign: a sequence-to-structure alignment tool integrating multiple sources of information in conditional random fields.
    Xia X; Zhang S; Su Y; Sun Z
    Bioinformatics; 2009 Jun; 25(11):1433-4. PubMed ID: 19359356
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A web-based three-dimensional protein retrieval system by matching visual similarity.
    Yeh JS; Chen DY; Chen BY; Ouhyoung M
    Bioinformatics; 2005 Jul; 21(13):3056-7. PubMed ID: 15840701
    [TBL] [Abstract][Full Text] [Related]  

  • 15. VISSA: a program to visualize structural features from structure sequence alignment.
    Li W; Godzik A
    Bioinformatics; 2006 Apr; 22(7):887-8. PubMed ID: 16434438
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MatrixPlot: visualizing sequence constraints.
    Gorodkin J; Staerfeldt HH; Lund O; Brunak S
    Bioinformatics; 1999 Sep; 15(9):769-70. PubMed ID: 10498780
    [TBL] [Abstract][Full Text] [Related]  

  • 17. COPid: composition based protein identification.
    Kumar M; Thakur V; Raghava GP
    In Silico Biol; 2008; 8(2):121-8. PubMed ID: 18928200
    [TBL] [Abstract][Full Text] [Related]  

  • 18. DBAli tools: mining the protein structure space.
    Marti-Renom MA; Pieper U; Madhusudhan MS; Rossi A; Eswar N; Davis FP; Al-Shahrour F; Dopazo J; Sali A
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W393-7. PubMed ID: 17478513
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Web-links as a means to document annotated sequence and 3D-structure alignments in systems biology.
    Gille C; Hoppe A; Holzhütter HG
    Genome Inform; 2008; 20():277-84. PubMed ID: 19425142
    [TBL] [Abstract][Full Text] [Related]  

  • 20. FragQA: predicting local fragment quality of a sequence-structure alignment.
    Gao X; Bu D; Li SC; Xu J; Li M
    Genome Inform; 2007; 19():27-39. PubMed ID: 18546502
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.