315 related articles for article (PubMed ID: 19533744)
1. Molecular determinants of the pKa values of Asp and Glu residues in staphylococcal nuclease.
Castañeda CA; Fitch CA; Majumdar A; Khangulov V; Schlessman JL; García-Moreno BE
Proteins; 2009 Nov; 77(3):570-88. PubMed ID: 19533744
[TBL] [Abstract][Full Text] [Related]
2. Molecular mechanisms of pH-driven conformational transitions of proteins: insights from continuum electrostatics calculations of acid unfolding.
Fitch CA; Whitten ST; Hilser VJ; García-Moreno E B
Proteins; 2006 Apr; 63(1):113-26. PubMed ID: 16400648
[TBL] [Abstract][Full Text] [Related]
3. Electrostatic effects in a network of polar and ionizable groups in staphylococcal nuclease.
Baran KL; Chimenti MS; Schlessman JL; Fitch CA; Herbst KJ; Garcia-Moreno BE
J Mol Biol; 2008 Jun; 379(5):1045-62. PubMed ID: 18499123
[TBL] [Abstract][Full Text] [Related]
4. Molecular dynamics study of water penetration in staphylococcal nuclease.
Damjanović A; García-Moreno B; Lattman EE; García AE
Proteins; 2005 Aug; 60(3):433-49. PubMed ID: 15971206
[TBL] [Abstract][Full Text] [Related]
5. Conformational consequences of ionization of Lys, Asp, and Glu buried at position 66 in staphylococcal nuclease.
Karp DA; Stahley MR; García-Moreno B
Biochemistry; 2010 May; 49(19):4138-46. PubMed ID: 20329780
[TBL] [Abstract][Full Text] [Related]
6. A buried lysine that titrates with a normal pKa: role of conformational flexibility at the protein-water interface as a determinant of pKa values.
Harms MJ; Schlessman JL; Chimenti MS; Sue GR; Damjanović A; García-Moreno B
Protein Sci; 2008 May; 17(5):833-45. PubMed ID: 18369193
[TBL] [Abstract][Full Text] [Related]
7. Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics.
Song J; Laskowski M; Qasim MA; Markley JL
Biochemistry; 2003 Jun; 42(21):6380-91. PubMed ID: 12767219
[TBL] [Abstract][Full Text] [Related]
8. Dissecting the electrostatic interactions and pH-dependent activity of a family 11 glycosidase.
Joshi MD; Sidhu G; Nielsen JE; Brayer GD; Withers SG; McIntosh LP
Biochemistry; 2001 Aug; 40(34):10115-39. PubMed ID: 11513590
[TBL] [Abstract][Full Text] [Related]
9. Exploring conformational changes coupled to ionization states using a hybrid Rosetta-MCCE protocol.
Song Y
Proteins; 2011 Dec; 79(12):3356-63. PubMed ID: 22072519
[TBL] [Abstract][Full Text] [Related]
10. The role of acidic amino acid residues in the structural stability of snake cardiotoxins.
Chiang CM; Chang SL; Lin HJ; Wu WG
Biochemistry; 1996 Jul; 35(28):9177-86. PubMed ID: 8703923
[TBL] [Abstract][Full Text] [Related]
11. Structural origins of high apparent dielectric constants experienced by ionizable groups in the hydrophobic core of a protein.
Chimenti MS; Castañeda CA; Majumdar A; García-Moreno E B
J Mol Biol; 2011 Jan; 405(2):361-77. PubMed ID: 21059359
[TBL] [Abstract][Full Text] [Related]
12. pK(a) calculations of calbindin D(9k): effects of Ca(2+) binding, protein dielectric constant, and ionic strength.
Juffer AH; Vogel HJ
Proteins; 2000 Dec; 41(4):554-67. PubMed ID: 11056042
[TBL] [Abstract][Full Text] [Related]
13. The role of hydrophobic microenvironments in modulating pKa shifts in proteins.
Mehler EL; Fuxreiter M; Simon I; Garcia-Moreno EB
Proteins; 2002 Aug; 48(2):283-92. PubMed ID: 12112696
[TBL] [Abstract][Full Text] [Related]
14. Empirical relationships between protein structure and carboxyl pKa values in proteins.
Forsyth WR; Antosiewicz JM; Robertson AD
Proteins; 2002 Aug; 48(2):388-403. PubMed ID: 12112705
[TBL] [Abstract][Full Text] [Related]
15. Dissecting structural and electrostatic interactions of charged groups in alpha-sarcin. An NMR study of some mutants involving the catalytic residues.
García-Mayoral MF; Pérez-Cañadillas JM; Santoro J; Ibarra-Molero B; Sanchez-Ruiz JM; Lacadena J; Martínez del Pozo A; Gavilanes JG; Rico M; Bruix M
Biochemistry; 2003 Nov; 42(45):13122-33. PubMed ID: 14609322
[TBL] [Abstract][Full Text] [Related]
16. The determinants of carboxyl pKa values in turkey ovomucoid third domain.
Li H; Robertson AD; Jensen JH
Proteins; 2004 May; 55(3):689-704. PubMed ID: 15103631
[TBL] [Abstract][Full Text] [Related]
17. Structure, dynamics and electrostatics of the active site of glutaredoxin 3 from Escherichia coli: comparison with functionally related proteins.
Foloppe N; Sagemark J; Nordstrand K; Berndt KD; Nilsson L
J Mol Biol; 2001 Jul; 310(2):449-70. PubMed ID: 11428900
[TBL] [Abstract][Full Text] [Related]
18. Hydrogen bonding is the prime determinant of carboxyl pKa values at the N-termini of alpha-helices.
Porter MA; Hall JR; Locke JC; Jensen JH; Molina PA
Proteins; 2006 May; 63(3):621-35. PubMed ID: 16447255
[TBL] [Abstract][Full Text] [Related]
19. MCCE analysis of the pKas of introduced buried acids and bases in staphylococcal nuclease.
Gunner MR; Zhu X; Klein MC
Proteins; 2011 Dec; 79(12):3306-19. PubMed ID: 21910138
[TBL] [Abstract][Full Text] [Related]
20. Effects of buried charged groups on cysteine thiol ionization and reactivity in Escherichia coli thioredoxin: structural and functional characterization of mutants of Asp 26 and Lys 57.
Dyson HJ; Jeng MF; Tennant LL; Slaby I; Lindell M; Cui DS; Kuprin S; Holmgren A
Biochemistry; 1997 Mar; 36(9):2622-36. PubMed ID: 9054569
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]