167 related articles for article (PubMed ID: 19534736)
1. GIBA: a clustering tool for detecting protein complexes.
Moschopoulos CN; Pavlopoulos GA; Schneider R; Likothanassis SD; Kossida S
BMC Bioinformatics; 2009 Jun; 10 Suppl 6(Suppl 6):S11. PubMed ID: 19534736
[TBL] [Abstract][Full Text] [Related]
2. Predicting protein complexes from weighted protein-protein interaction graphs with a novel unsupervised methodology: Evolutionary enhanced Markov clustering.
Theofilatos K; Pavlopoulou N; Papasavvas C; Likothanassis S; Dimitrakopoulos C; Georgopoulos E; Moschopoulos C; Mavroudi S
Artif Intell Med; 2015 Mar; 63(3):181-9. PubMed ID: 25765008
[TBL] [Abstract][Full Text] [Related]
3. Evaluation of clustering algorithms for protein-protein interaction networks.
Brohée S; van Helden J
BMC Bioinformatics; 2006 Nov; 7():488. PubMed ID: 17087821
[TBL] [Abstract][Full Text] [Related]
4. Markov clustering versus affinity propagation for the partitioning of protein interaction graphs.
Vlasblom J; Wodak SJ
BMC Bioinformatics; 2009 Mar; 10():99. PubMed ID: 19331680
[TBL] [Abstract][Full Text] [Related]
5. From Function to Interaction: A New Paradigm for Accurately Predicting Protein Complexes Based on Protein-to-Protein Interaction Networks.
Xu B; Guan J
IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(4):616-27. PubMed ID: 26356332
[TBL] [Abstract][Full Text] [Related]
6. A Type-2 fuzzy data fusion approach for building reliable weighted protein interaction networks with application in protein complex detection.
Mehranfar A; Ghadiri N; Kouhsar M; Golshani A
Comput Biol Med; 2017 Sep; 88():18-31. PubMed ID: 28672176
[TBL] [Abstract][Full Text] [Related]
7. Identifying protein complexes by reducing noise in interaction networks.
Liao B; Fu X; Cai L; Chen H
Protein Pept Lett; 2014 Jul; 21(7):688-95. PubMed ID: 24654850
[TBL] [Abstract][Full Text] [Related]
8. Detection of overlapping protein complexes in gene expression, phenotype and pathways of Saccharomyces cerevisiae using Prorank based Fuzzy algorithm.
Manikandan P; Ramyachitra D; Banupriya D
Gene; 2016 Apr; 580(2):144-158. PubMed ID: 26809099
[TBL] [Abstract][Full Text] [Related]
9. Protein complex detection using interaction reliability assessment and weighted clustering coefficient.
Zaki N; Efimov D; Berengueres J
BMC Bioinformatics; 2013 May; 14():163. PubMed ID: 23688127
[TBL] [Abstract][Full Text] [Related]
10. A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks.
Ou-Yang L; Yan H; Zhang XF
BMC Bioinformatics; 2017 Dec; 18(Suppl 13):463. PubMed ID: 29219066
[TBL] [Abstract][Full Text] [Related]
11. A degree-distribution based hierarchical agglomerative clustering algorithm for protein complexes identification.
Yu L; Gao L; Li K; Zhao Y; Chiu DK
Comput Biol Chem; 2011 Oct; 35(5):298-307. PubMed ID: 22000801
[TBL] [Abstract][Full Text] [Related]
12. Protein complex prediction via dense subgraphs and false positive analysis.
Hernandez C; Mella C; Navarro G; Olivera-Nappa A; Araya J
PLoS One; 2017; 12(9):e0183460. PubMed ID: 28937982
[TBL] [Abstract][Full Text] [Related]
13. Detecting Protein Complexes Based on Uncertain Graph Model.
Zhao B; Wang J; Li M; Wu FX; Pan Y
IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(3):486-97. PubMed ID: 26356017
[TBL] [Abstract][Full Text] [Related]
14. The use of edge-betweenness clustering to investigate biological function in protein interaction networks.
Dunn R; Dudbridge F; Sanderson CM
BMC Bioinformatics; 2005 Mar; 6():39. PubMed ID: 15740614
[TBL] [Abstract][Full Text] [Related]
15. Finding molecular complexes through multiple layer clustering of protein interaction networks.
Andreopoulos B; An A; Huang X; Wang X
Int J Bioinform Res Appl; 2007; 3(1):65-85. PubMed ID: 18048173
[TBL] [Abstract][Full Text] [Related]
16. Resolving the structure of interactomes with hierarchical agglomerative clustering.
Park Y; Bader JS
BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S44. PubMed ID: 21342576
[TBL] [Abstract][Full Text] [Related]
17. Protein complex prediction via verifying and reconstructing the topology of domain-domain interactions.
Ozawa Y; Saito R; Fujimori S; Kashima H; Ishizaka M; Yanagawa H; Miyamoto-Sato E; Tomita M
BMC Bioinformatics; 2010 Jun; 11():350. PubMed ID: 20584269
[TBL] [Abstract][Full Text] [Related]
18. The relative vertex clustering value--a new criterion for the fast discovery of functional modules in protein interaction networks.
Ibrahim ZM; Ngom A
BMC Bioinformatics; 2015; 16 Suppl 4(Suppl 4):S3. PubMed ID: 25734691
[TBL] [Abstract][Full Text] [Related]
19. A seed-extended algorithm for detecting protein complexes based on density and modularity with topological structure and GO annotations.
Wang R; Wang C; Sun L; Liu G
BMC Genomics; 2019 Aug; 20(1):637. PubMed ID: 31390979
[TBL] [Abstract][Full Text] [Related]
20. Detection of protein complexes from affinity purification/mass spectrometry data.
Cai B; Wang H; Zheng H; Wang H
BMC Syst Biol; 2012; 6 Suppl 3(Suppl 3):S4. PubMed ID: 23282282
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]