These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

135 related articles for article (PubMed ID: 19534748)

  • 21. The amino acid alphabet and the architecture of the protein sequence-structure map. I. Binary alphabets.
    Ferrada E
    PLoS Comput Biol; 2014 Dec; 10(12):e1003946. PubMed ID: 25473967
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Analyses of the general rule on residue pair frequencies in local amino acid sequences of soluble, ordered proteins.
    Shirota M; Kinoshita K
    Protein Sci; 2013 Jun; 22(6):725-33. PubMed ID: 23526551
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Capturing protein sequence-structure specificity using computational sequence design.
    Mach P; Koehl P
    Proteins; 2013 Sep; 81(9):1556-70. PubMed ID: 23609941
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Combining evolutionary and structural information for local protein structure prediction.
    Pei J; Grishin NV
    Proteins; 2004 Sep; 56(4):782-94. PubMed ID: 15281130
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Natural selection and algorithmic design of mRNA.
    Cohen B; Skiena S
    J Comput Biol; 2003; 10(3-4):419-32. PubMed ID: 12935336
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Do natural proteins differ from random sequences polypeptides? Natural vs. random proteins classification using an evolutionary neural network.
    De Lucrezia D; Slanzi D; Poli I; Polticelli F; Minervini G
    PLoS One; 2012; 7(5):e36634. PubMed ID: 22615786
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Reduced alphabet of prebiotic amino acids optimally encodes the conformational space of diverse extant protein folds.
    Solis AD
    BMC Evol Biol; 2019 Jul; 19(1):158. PubMed ID: 31362700
    [TBL] [Abstract][Full Text] [Related]  

  • 28. A Rosetta-based protein design protocol converging to natural sequences.
    Sormani G; Harteveld Z; Rosset S; Correia B; Laio A
    J Chem Phys; 2021 Feb; 154(7):074114. PubMed ID: 33607903
    [TBL] [Abstract][Full Text] [Related]  

  • 29. [Simulation of alpha-helix and beta-hairpin formation in water-soluble proteins by the code physics method].
    Shestopalov BV
    Tsitologiia; 2007; 49(7):594-600. PubMed ID: 17918344
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Beyond the Twilight Zone: automated prediction of structural properties of proteins by recursive neural networks and remote homology information.
    Mooney C; Pollastri G
    Proteins; 2009 Oct; 77(1):181-90. PubMed ID: 19422056
    [TBL] [Abstract][Full Text] [Related]  

  • 31. PFRES: protein fold classification by using evolutionary information and predicted secondary structure.
    Chen K; Kurgan L
    Bioinformatics; 2007 Nov; 23(21):2843-50. PubMed ID: 17942446
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Construction and characterization of protein libraries composed of secondary structure modules.
    Matsuura T; Ernst A; Plückthun A
    Protein Sci; 2002 Nov; 11(11):2631-43. PubMed ID: 12381846
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Geometric and statistical properties of the mean-field hydrophobic-polar model, the large-small model, and real protein sequences.
    Shih CT; Su ZY; Gwan JF; Hao BL; Hsieh CH; Lo JL; Lee HC
    Phys Rev E Stat Nonlin Soft Matter Phys; 2002 Apr; 65(4 Pt 1):041923. PubMed ID: 12005889
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Intrinsic disorder in the Protein Data Bank.
    Le Gall T; Romero PR; Cortese MS; Uversky VN; Dunker AK
    J Biomol Struct Dyn; 2007 Feb; 24(4):325-42. PubMed ID: 17206849
    [TBL] [Abstract][Full Text] [Related]  

  • 35. The evolution of proteins from random amino acid sequences. I. Evidence from the lengthwise distribution of amino acids in modern protein sequences.
    White SH; Jacobs RE
    J Mol Evol; 1993 Jan; 36(1):79-95. PubMed ID: 8433379
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Use of variable selection in modeling the secondary structural content of proteins from their composition of amino acid residues.
    Pilizota T; Lucić B; Trinajstić N
    J Chem Inf Comput Sci; 2004; 44(1):113-21. PubMed ID: 14741017
    [TBL] [Abstract][Full Text] [Related]  

  • 37. SVM-based method for protein structural class prediction using secondary structural content and structural information of amino acids.
    Mohammad TA; Nagarajaram HA
    J Bioinform Comput Biol; 2011 Aug; 9(4):489-502. PubMed ID: 21776605
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Charged single alpha-helix: a versatile protein structural motif.
    Süveges D; Gáspári Z; Tóth G; Nyitray L
    Proteins; 2009 Mar; 74(4):905-16. PubMed ID: 18712826
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling.
    Engelen S; Trojan LA; Sacquin-Mora S; Lavery R; Carbone A
    PLoS Comput Biol; 2009 Jan; 5(1):e1000267. PubMed ID: 19165315
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A novel predictor for protein structural class based on integrated information of the secondary structure sequence.
    Zhang L; Zhao X; Kong L; Liu S
    Biochimie; 2014 Aug; 103():131-6. PubMed ID: 24859536
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.