264 related articles for article (PubMed ID: 19540243)
1. Correlation of RNA secondary structure statistics with thermodynamic stability and applications to folding.
Wu JC; Gardner DP; Ozer S; Gutell RR; Ren P
J Mol Biol; 2009 Aug; 391(4):769-83. PubMed ID: 19540243
[TBL] [Abstract][Full Text] [Related]
2. Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction.
Doshi KJ; Cannone JJ; Cobaugh CW; Gutell RR
BMC Bioinformatics; 2004 Aug; 5():105. PubMed ID: 15296519
[TBL] [Abstract][Full Text] [Related]
3. Structural constraints identified with covariation analysis in ribosomal RNA.
Shang L; Xu W; Ozer S; Gutell RR
PLoS One; 2012; 7(6):e39383. PubMed ID: 22724009
[TBL] [Abstract][Full Text] [Related]
4. The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.
Cannone JJ; Subramanian S; Schnare MN; Collett JR; D'Souza LM; Du Y; Feng B; Lin N; Madabusi LV; Müller KM; Pande N; Shang Z; Yu N; Gutell RR
BMC Bioinformatics; 2002; 3():2. PubMed ID: 11869452
[TBL] [Abstract][Full Text] [Related]
5. Statistical potentials for hairpin and internal loops improve the accuracy of the predicted RNA structure.
Gardner DP; Ren P; Ozer S; Gutell RR
J Mol Biol; 2011 Oct; 413(2):473-83. PubMed ID: 21889515
[TBL] [Abstract][Full Text] [Related]
6. Assessing the reliability of RNA folding using statistical mechanics.
Huynen M; Gutell R; Konings D
J Mol Biol; 1997 Apr; 267(5):1104-12. PubMed ID: 9150399
[TBL] [Abstract][Full Text] [Related]
7. The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution.
Mueller F; Sommer I; Baranov P; Matadeen R; Stoldt M; Wöhnert J; Görlach M; van Heel M; Brimacombe R
J Mol Biol; 2000 Apr; 298(1):35-59. PubMed ID: 10756104
[TBL] [Abstract][Full Text] [Related]
8. RNase J is involved in the 5'-end maturation of 16S rRNA and 23S rRNA in Sinorhizobium meliloti.
Madhugiri R; Evguenieva-Hackenberg E
FEBS Lett; 2009 Jul; 583(14):2339-42. PubMed ID: 19540834
[TBL] [Abstract][Full Text] [Related]
9. Identification of a structural motif of 23S rRNA interacting with 5S rRNA.
Ko J; Lee Y; Park I; Cho B
FEBS Lett; 2001 Nov; 508(3):300-4. PubMed ID: 11728439
[TBL] [Abstract][Full Text] [Related]
10. Secondary structure prediction for aligned RNA sequences.
Hofacker IL; Fekete M; Stadler PF
J Mol Biol; 2002 Jun; 319(5):1059-66. PubMed ID: 12079347
[TBL] [Abstract][Full Text] [Related]
11. Molecular organization of the ribosomal RNA transcription unit and the phylogenetic study of Zymomonas mobilis ZM4.
Lee JS; Jin SJ; Kang HS
Mol Cells; 2001 Feb; 11(1):68-74. PubMed ID: 11266123
[TBL] [Abstract][Full Text] [Related]
12. Predicting U-turns in ribosomal RNA with comparative sequence analysis.
Gutell RR; Cannone JJ; Konings D; Gautheret D
J Mol Biol; 2000 Jul; 300(4):791-803. PubMed ID: 10891269
[TBL] [Abstract][Full Text] [Related]
13. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure.
Mathews DH; Sabina J; Zuker M; Turner DH
J Mol Biol; 1999 May; 288(5):911-40. PubMed ID: 10329189
[TBL] [Abstract][Full Text] [Related]
14. "Well-determined" regions in RNA secondary structure prediction: analysis of small subunit ribosomal RNA.
Zuker M; Jacobson AB
Nucleic Acids Res; 1995 Jul; 23(14):2791-8. PubMed ID: 7544463
[TBL] [Abstract][Full Text] [Related]
15. Mapping the inside of the ribosome with an RNA helical ruler.
Joseph S; Weiser B; Noller HF
Science; 1997 Nov; 278(5340):1093-8. PubMed ID: 9353184
[TBL] [Abstract][Full Text] [Related]
16. RNA secondary structure prediction based on free energy and phylogenetic analysis.
Juan V; Wilson C
J Mol Biol; 1999 Jun; 289(4):935-47. PubMed ID: 10369773
[TBL] [Abstract][Full Text] [Related]
17. RNA folding energy landscapes.
Chen SJ; Dill KA
Proc Natl Acad Sci U S A; 2000 Jan; 97(2):646-51. PubMed ID: 10639133
[TBL] [Abstract][Full Text] [Related]
18. Sequence and structural conservation in RNA ribose zippers.
Tamura M; Holbrook SR
J Mol Biol; 2002 Jul; 320(3):455-74. PubMed ID: 12096903
[TBL] [Abstract][Full Text] [Related]
19. A story: unpaired adenosine bases in ribosomal RNAs.
Gutell RR; Cannone JJ; Shang Z; Du Y; Serra MJ
J Mol Biol; 2000 Dec; 304(3):335-54. PubMed ID: 11090278
[TBL] [Abstract][Full Text] [Related]
20. Moments of the Boltzmann distribution for RNA secondary structures.
Miklós I; Meyer IM; Nagy B
Bull Math Biol; 2005 Sep; 67(5):1031-47. PubMed ID: 15998494
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]