These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

917 related articles for article (PubMed ID: 19542151)

  • 1. VarScan: variant detection in massively parallel sequencing of individual and pooled samples.
    Koboldt DC; Chen K; Wylie T; Larson DE; McLellan MD; Mardis ER; Weinstock GM; Wilson RK; Ding L
    Bioinformatics; 2009 Sep; 25(17):2283-5. PubMed ID: 19542151
    [TBL] [Abstract][Full Text] [Related]  

  • 2. GemSIM: general, error-model based simulator of next-generation sequencing data.
    McElroy KE; Luciani F; Thomas T
    BMC Genomics; 2012 Feb; 13():74. PubMed ID: 22336055
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evaluation of variant detection software for pooled next-generation sequence data.
    Huang HW; ; Mullikin JC; Hansen NF
    BMC Bioinformatics; 2015 Jul; 16():235. PubMed ID: 26220471
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Evaluating Variant Calling Tools for Non-Matched Next-Generation Sequencing Data.
    Sandmann S; de Graaf AO; Karimi M; van der Reijden BA; Hellström-Lindberg E; Jansen JH; Dugas M
    Sci Rep; 2017 Feb; 7():43169. PubMed ID: 28233799
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Massively parallel sequencing approaches for characterization of structural variation.
    Koboldt DC; Larson DE; Chen K; Ding L; Wilson RK
    Methods Mol Biol; 2012; 838():369-84. PubMed ID: 22228022
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Mining SNPs from DNA sequence data; computational approaches to SNP discovery and analysis.
    van Oeveren J; Janssen A
    Methods Mol Biol; 2009; 578():73-91. PubMed ID: 19768587
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform.
    Liu Y; Schmidt B; Maskell DL
    Bioinformatics; 2012 Jul; 28(14):1830-7. PubMed ID: 22576173
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner.
    Luo R; Wong T; Zhu J; Liu CM; Zhu X; Wu E; Lee LK; Lin H; Zhu W; Cheung DW; Ting HF; Yiu SM; Peng S; Yu C; Li Y; Li R; Lam TW
    PLoS One; 2013; 8(5):e65632. PubMed ID: 23741504
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Review of alignment and SNP calling algorithms for next-generation sequencing data.
    Mielczarek M; Szyda J
    J Appl Genet; 2016 Feb; 57(1):71-9. PubMed ID: 26055432
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Analysis of high-throughput sequencing data.
    Mane SP; Modise T; Sobral BW
    Methods Mol Biol; 2011; 678():1-11. PubMed ID: 20931368
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Amplicon Indel Hunter Is a Novel Bioinformatics Tool to Detect Large Somatic Insertion/Deletion Mutations in Amplicon-Based Next-Generation Sequencing Data.
    Kadri S; Zhen CJ; Wurst MN; Long BC; Jiang ZF; Wang YL; Furtado LV; Segal JP
    J Mol Diagn; 2015 Nov; 17(6):635-43. PubMed ID: 26319364
    [TBL] [Abstract][Full Text] [Related]  

  • 12. EagleView: a genome assembly viewer for next-generation sequencing technologies.
    Huang W; Marth G
    Genome Res; 2008 Sep; 18(9):1538-43. PubMed ID: 18550804
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Challenges in exome analysis by LifeScope and its alternative computational pipelines.
    Pranckevičiene E; Rančelis T; Pranculis A; Kučinskas V
    BMC Res Notes; 2015 Sep; 8():421. PubMed ID: 26346699
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A probabilistic method for the detection and genotyping of small indels from population-scale sequence data.
    Bansal V; Libiger O
    Bioinformatics; 2011 Aug; 27(15):2047-53. PubMed ID: 21653520
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A statistical method for the detection of variants from next-generation resequencing of DNA pools.
    Bansal V
    Bioinformatics; 2010 Jun; 26(12):i318-24. PubMed ID: 20529923
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Correction of sequencing errors in a mixed set of reads.
    Salmela L
    Bioinformatics; 2010 May; 26(10):1284-90. PubMed ID: 20378555
    [TBL] [Abstract][Full Text] [Related]  

  • 17. TIA: algorithms for development of identity-linked SNP islands for analysis by massively parallel DNA sequencing.
    Farris MH; Scott AR; Texter PA; Bartlett M; Coleman P; Masters D
    BMC Bioinformatics; 2018 Apr; 19(1):126. PubMed ID: 29642839
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Variant Calling From Next Generation Sequence Data.
    Hansen NF
    Methods Mol Biol; 2016; 1418():209-24. PubMed ID: 27008017
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Microindel detection in short-read sequence data.
    Krawitz P; Rödelsperger C; Jäger M; Jostins L; Bauer S; Robinson PN
    Bioinformatics; 2010 Mar; 26(6):722-9. PubMed ID: 20144947
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A Long-Read Sequencing Approach for Direct Haplotype Phasing in Clinical Settings.
    Maestri S; Maturo MG; Cosentino E; Marcolungo L; Iadarola B; Fortunati E; Rossato M; Delledonne M
    Int J Mol Sci; 2020 Dec; 21(23):. PubMed ID: 33271988
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 46.