175 related articles for article (PubMed ID: 19558703)
1. ResBoost: characterizing and predicting catalytic residues in enzymes.
Alterovitz R; Arvey A; Sankararaman S; Dallett C; Freund Y; Sjölander K
BMC Bioinformatics; 2009 Jun; 10():197. PubMed ID: 19558703
[TBL] [Abstract][Full Text] [Related]
2. Enhanced performance in prediction of protein active sites with THEMATICS and support vector machines.
Tong W; Williams RJ; Wei Y; Murga LF; Ko J; Ondrechen MJ
Protein Sci; 2008 Feb; 17(2):333-41. PubMed ID: 18096640
[TBL] [Abstract][Full Text] [Related]
3. Prediction of catalytic residues using Support Vector Machine with selected protein sequence and structural properties.
Petrova NV; Wu CH
BMC Bioinformatics; 2006 Jun; 7():312. PubMed ID: 16790052
[TBL] [Abstract][Full Text] [Related]
4. The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data.
Porter CT; Bartlett GJ; Thornton JM
Nucleic Acids Res; 2004 Jan; 32(Database issue):D129-33. PubMed ID: 14681376
[TBL] [Abstract][Full Text] [Related]
5. Prediction of active sites of enzymes by maximum relevance minimum redundancy (mRMR) feature selection.
Gao YF; Li BQ; Cai YD; Feng KY; Li ZD; Jiang Y
Mol Biosyst; 2013 Jan; 9(1):61-9. PubMed ID: 23117653
[TBL] [Abstract][Full Text] [Related]
6. PINGU: PredIction of eNzyme catalytic residues usinG seqUence information.
Pai PP; Ranjani SS; Mondal S
PLoS One; 2015; 10(8):e0135122. PubMed ID: 26261982
[TBL] [Abstract][Full Text] [Related]
7. Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease.
Xin F; Myers S; Li YF; Cooper DN; Mooney SD; Radivojac P
Bioinformatics; 2010 Aug; 26(16):1975-82. PubMed ID: 20551136
[TBL] [Abstract][Full Text] [Related]
8. Identification of catalytic residues using a novel feature that integrates the microenvironment and geometrical location properties of residues.
Han L; Zhang YJ; Song J; Liu MS; Zhang Z
PLoS One; 2012; 7(7):e41370. PubMed ID: 22829945
[TBL] [Abstract][Full Text] [Related]
9. Predicting and annotating catalytic residues: an information theoretic approach.
Sterner B; Singh R; Berger B
J Comput Biol; 2007 Oct; 14(8):1058-73. PubMed ID: 17887954
[TBL] [Abstract][Full Text] [Related]
10. The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes.
Furnham N; Holliday GL; de Beer TA; Jacobsen JO; Pearson WR; Thornton JM
Nucleic Acids Res; 2014 Jan; 42(Database issue):D485-9. PubMed ID: 24319146
[TBL] [Abstract][Full Text] [Related]
11. Rapid catalytic template searching as an enzyme function prediction procedure.
Nilmeier JP; Kirshner DA; Wong SE; Lightstone FC
PLoS One; 2013; 8(5):e62535. PubMed ID: 23675414
[TBL] [Abstract][Full Text] [Related]
12. Analysis of catalytic residues in enzyme active sites.
Bartlett GJ; Porter CT; Borkakoti N; Thornton JM
J Mol Biol; 2002 Nov; 324(1):105-21. PubMed ID: 12421562
[TBL] [Abstract][Full Text] [Related]
13. Automated method for predicting enzyme functional surfaces and locating key residues with accuracy and specificity.
Tseng YY; Liang J
Conf Proc IEEE Eng Med Biol Soc; 2006; 2006():4552-5. PubMed ID: 17947099
[TBL] [Abstract][Full Text] [Related]
14. An improved prediction of catalytic residues in enzyme structures.
Tang YR; Sheng ZY; Chen YZ; Zhang Z
Protein Eng Des Sel; 2008 May; 21(5):295-302. PubMed ID: 18287176
[TBL] [Abstract][Full Text] [Related]
15. Networks of high mutual information define the structural proximity of catalytic sites: implications for catalytic residue identification.
Marino Buslje C; Teppa E; Di Doménico T; Delfino JM; Nielsen M
PLoS Comput Biol; 2010 Nov; 6(11):e1000978. PubMed ID: 21079665
[TBL] [Abstract][Full Text] [Related]
16. Sequence-based enzyme catalytic domain prediction using clustering and aggregated mutual information content.
Choi K; Kim S
J Bioinform Comput Biol; 2011 Oct; 9(5):597-611. PubMed ID: 21976378
[TBL] [Abstract][Full Text] [Related]
17. An assessment of catalytic residue 3D ensembles for the prediction of enzyme function.
Žváček C; Friedrichs G; Heizinger L; Merkl R
BMC Bioinformatics; 2015 Nov; 16():359. PubMed ID: 26538500
[TBL] [Abstract][Full Text] [Related]
18. A global analysis of function and conservation of catalytic residues in enzymes.
Ribeiro AJM; Tyzack JD; Borkakoti N; Holliday GL; Thornton JM
J Biol Chem; 2020 Jan; 295(2):314-324. PubMed ID: 31796628
[TBL] [Abstract][Full Text] [Related]
19. HemeBIND: a novel method for heme binding residue prediction by combining structural and sequence information.
Liu R; Hu J
BMC Bioinformatics; 2011 May; 12():207. PubMed ID: 21612668
[TBL] [Abstract][Full Text] [Related]
20. PREvaIL, an integrative approach for inferring catalytic residues using sequence, structural, and network features in a machine-learning framework.
Song J; Li F; Takemoto K; Haffari G; Akutsu T; Chou KC; Webb GI
J Theor Biol; 2018 Apr; 443():125-137. PubMed ID: 29408627
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]