These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

183 related articles for article (PubMed ID: 19563622)

  • 1. Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis.
    Yi M; Mudunuri U; Che A; Stephens RM
    BMC Bioinformatics; 2009 Jun; 10():200. PubMed ID: 19563622
    [TBL] [Abstract][Full Text] [Related]  

  • 2. WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data.
    Yi M; Horton JD; Cohen JC; Hobbs HH; Stephens RM
    BMC Bioinformatics; 2006 Jan; 7():30. PubMed ID: 16423281
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SLEPR: a sample-level enrichment-based pathway ranking method -- seeking biological themes through pathway-level consistency.
    Yi M; Stephens RM
    PLoS One; 2008 Sep; 3(9):e3288. PubMed ID: 18818771
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Lists2Networks: integrated analysis of gene/protein lists.
    Lachmann A; Ma'ayan A
    BMC Bioinformatics; 2010 Feb; 11():87. PubMed ID: 20152038
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Mining published lists of cancer related microarray experiments: identification of a gene expression signature having a critical role in cell-cycle control.
    Finocchiaro G; Mancuso F; Muller H
    BMC Bioinformatics; 2005 Dec; 6 Suppl 4(Suppl 4):S14. PubMed ID: 16351740
    [TBL] [Abstract][Full Text] [Related]  

  • 6. WGCNA: an R package for weighted correlation network analysis.
    Langfelder P; Horvath S
    BMC Bioinformatics; 2008 Dec; 9():559. PubMed ID: 19114008
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Importing ArrayExpress datasets into R/Bioconductor.
    Kauffmann A; Rayner TF; Parkinson H; Kapushesky M; Lukk M; Brazma A; Huber W
    Bioinformatics; 2009 Aug; 25(16):2092-4. PubMed ID: 19505942
    [TBL] [Abstract][Full Text] [Related]  

  • 8. DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.
    Huang DW; Sherman BT; Tan Q; Kir J; Liu D; Bryant D; Guo Y; Stephens R; Baseler MW; Lane HC; Lempicki RA
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W169-75. PubMed ID: 17576678
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists.
    Huang DW; Sherman BT; Tan Q; Collins JR; Alvord WG; Roayaei J; Stephens R; Baseler MW; Lane HC; Lempicki RA
    Genome Biol; 2007; 8(9):R183. PubMed ID: 17784955
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets.
    Baron D; Bihouée A; Teusan R; Dubois E; Savagner F; Steenman M; Houlgatte R; Ramstein G
    Bioinformatics; 2011 Mar; 27(5):725-6. PubMed ID: 21216776
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SiPaGene: A new repository for instant online retrieval, sharing and meta-analyses of GeneChip expression data.
    Menssen A; Edinger G; Grün JR; Haase U; Baumgrass R; Grützkau A; Radbruch A; Burmester GR; Häupl T
    BMC Genomics; 2009 Mar; 10():98. PubMed ID: 19265543
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB.
    Chatziioannou A; Moulos P; Kolisis FN
    BMC Bioinformatics; 2009 Oct; 10():354. PubMed ID: 19860866
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Probabilistic retrieval and visualization of biologically relevant microarray experiments.
    Caldas J; Gehlenborg N; Faisal A; Brazma A; Kaski S
    Bioinformatics; 2009 Jun; 25(12):i145-53. PubMed ID: 19477980
    [TBL] [Abstract][Full Text] [Related]  

  • 14. BubbleGUM: automatic extraction of phenotype molecular signatures and comprehensive visualization of multiple Gene Set Enrichment Analyses.
    Spinelli L; Carpentier S; Montañana Sanchis F; Dalod M; Vu Manh TP
    BMC Genomics; 2015 Oct; 16():814. PubMed ID: 26481321
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genome Expression Pathway Analysis Tool--analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context.
    Weniger M; Engelmann JC; Schultz J
    BMC Bioinformatics; 2007 Jun; 8():179. PubMed ID: 17543125
    [TBL] [Abstract][Full Text] [Related]  

  • 16. GeneMesh: a web-based microarray analysis tool for relating differentially expressed genes to MeSH terms.
    Jani SD; Argraves GL; Barth JL; Argraves WS
    BMC Bioinformatics; 2010 Apr; 11():166. PubMed ID: 20359363
    [TBL] [Abstract][Full Text] [Related]  

  • 17. BART: bioinformatics array research tool.
    Amaral ML; Erikson GA; Shokhirev MN
    BMC Bioinformatics; 2018 Aug; 19(1):296. PubMed ID: 30089462
    [TBL] [Abstract][Full Text] [Related]  

  • 18. STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data.
    Jupiter D; Chen H; VanBuren V
    BMC Bioinformatics; 2009 Oct; 10():332. PubMed ID: 19828039
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Goober: a fully integrated and user-friendly microarray data management and analysis solution for core labs and bench biologists.
    Luo W; Gudipati M; Jung K; Chen M; Marschke KB
    J Integr Bioinform; 2009 Aug; 6(1):108. PubMed ID: 20134074
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Software packages for quantitative microarray-based gene expression analysis.
    Dresen IM; Hüsing J; Kruse E; Boes T; Jöckel KH
    Curr Pharm Biotechnol; 2003 Dec; 4(6):417-37. PubMed ID: 14683435
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.