These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

226 related articles for article (PubMed ID: 19581427)

  • 1. Integrated study of copy number states and genotype calls using high-density SNP arrays.
    Sun W; Wright FA; Tang Z; Nordgard SH; Van Loo P; Yu T; Kristensen VN; Perou CM
    Nucleic Acids Res; 2009 Sep; 37(16):5365-77. PubMed ID: 19581427
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An integrated analysis tool for analyzing hybridization intensities and genotypes using new-generation population-optimized human arrays.
    Huang MC; Chuang TP; Chen CH; Wu JY; Chen YT; Li LH; Yang HC
    BMC Genomics; 2016 Mar; 17():266. PubMed ID: 27029637
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Distinguishing somatic and germline copy number events in cancer patient DNA hybridized to whole-genome SNP genotyping arrays.
    Ha G; Shah S
    Methods Mol Biol; 2013; 973():355-72. PubMed ID: 23412801
    [TBL] [Abstract][Full Text] [Related]  

  • 4. HaplotypeCN: copy number haplotype inference with Hidden Markov Model and localized haplotype clustering.
    Lin YJ; Chen YT; Hsu SN; Peng CH; Tang CY; Yen TC; Hsieh WP
    PLoS One; 2014; 9(5):e96841. PubMed ID: 24849202
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Precise inference of copy number alterations in tumor samples from SNP arrays.
    Chen GK; Chang X; Curtis C; Wang K
    Bioinformatics; 2013 Dec; 29(23):2964-70. PubMed ID: 24021380
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle.
    Rafter P; Gormley IC; Parnell AC; Kearney JF; Berry DP
    BMC Genomics; 2020 Mar; 21(1):205. PubMed ID: 32131735
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Identification of Copy Number Variants from SNP Arrays Using PennCNV.
    Fang L; Wang K
    Methods Mol Biol; 2018; 1833():1-28. PubMed ID: 30039360
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays.
    Komura D; Shen F; Ishikawa S; Fitch KR; Chen W; Zhang J; Liu G; Ihara S; Nakamura H; Hurles ME; Lee C; Scherer SW; Jones KW; Shapero MH; Huang J; Aburatani H
    Genome Res; 2006 Dec; 16(12):1575-84. PubMed ID: 17122084
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs.
    Korn JM; Kuruvilla FG; McCarroll SA; Wysoker A; Nemesh J; Cawley S; Hubbell E; Veitch J; Collins PJ; Darvishi K; Lee C; Nizzari MM; Gabriel SB; Purcell S; Daly MJ; Altshuler D
    Nat Genet; 2008 Oct; 40(10):1253-60. PubMed ID: 18776909
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Exploiting sequence similarity to validate the sensitivity of SNP arrays in detecting fine-scaled copy number variations.
    Wong G; Leckie C; Gorringe KL; Haviv I; Campbell IG; Kowalczyk A
    Bioinformatics; 2010 Apr; 26(8):1007-14. PubMed ID: 20189937
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data.
    Wang K; Li M; Hadley D; Liu R; Glessner J; Grant SF; Hakonarson H; Bucan M
    Genome Res; 2007 Nov; 17(11):1665-74. PubMed ID: 17921354
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An algorithm for detecting high frequency copy number polymorphisms using SNP arrays.
    Halldórsson BV; Gudbjartsson DF
    J Comput Biol; 2011 Aug; 18(8):955-66. PubMed ID: 21728861
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer.
    Kloth JN; Oosting J; van Wezel T; Szuhai K; Knijnenburg J; Gorter A; Kenter GG; Fleuren GJ; Jordanova ES
    BMC Genomics; 2007 Feb; 8():53. PubMed ID: 17311676
    [TBL] [Abstract][Full Text] [Related]  

  • 14. TAFFYS: An Integrated Tool for Comprehensive Analysis of Genomic Aberrations in Tumor Samples.
    Liu Y; Li A; Feng H; Wang M
    PLoS One; 2015; 10(6):e0129835. PubMed ID: 26111017
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Modeling genetic inheritance of copy number variations.
    Wang K; Chen Z; Tadesse MG; Glessner J; Grant SF; Hakonarson H; Bucan M; Li M
    Nucleic Acids Res; 2008 Dec; 36(21):e138. PubMed ID: 18832372
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Global variation in copy number in the human genome.
    Redon R; Ishikawa S; Fitch KR; Feuk L; Perry GH; Andrews TD; Fiegler H; Shapero MH; Carson AR; Chen W; Cho EK; Dallaire S; Freeman JL; González JR; Gratacòs M; Huang J; Kalaitzopoulos D; Komura D; MacDonald JR; Marshall CR; Mei R; Montgomery L; Nishimura K; Okamura K; Shen F; Somerville MJ; Tchinda J; Valsesia A; Woodwark C; Yang F; Zhang J; Zerjal T; Zhang J; Armengol L; Conrad DF; Estivill X; Tyler-Smith C; Carter NP; Aburatani H; Lee C; Jones KW; Scherer SW; Hurles ME
    Nature; 2006 Nov; 444(7118):444-54. PubMed ID: 17122850
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays.
    Lamy P; Andersen CL; Dyrskjot L; Torring N; Wiuf C
    BMC Bioinformatics; 2007 Nov; 8():434. PubMed ID: 17996079
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Hybridization modeling of oligonucleotide SNP arrays for accurate DNA copy number estimation.
    Wan L; Sun K; Ding Q; Cui Y; Li M; Wen Y; Elston RC; Qian M; Fu WJ
    Nucleic Acids Res; 2009 Sep; 37(17):e117. PubMed ID: 19586935
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Tumor classification based on DNA copy number aberrations determined using SNP arrays.
    Wang Y; Makedon F; Pearlman J
    Oncol Rep; 2006; 15(4):1057-1059. PubMed ID: 16525700
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Across array comparative genomic hybridization: a strategy to reduce reference channel hybridizations.
    Buffart TE; Israeli D; Tijssen M; Vosse SJ; Mrsić A; Meijer GA; Ylstra B
    Genes Chromosomes Cancer; 2008 Nov; 47(11):994-1004. PubMed ID: 18663753
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.