BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

286 related articles for article (PubMed ID: 19598227)

  • 1. A statistical thermodynamic approach for predicting the sequence-dependent nucleosome positioning along genomes.
    Scipioni A; Morosetti S; De Santis P
    Biopolymers; 2009 Dec; 91(12):1143-53. PubMed ID: 19598227
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Prediction of nucleosome positioning in genomes: limits and perspectives of physical and bioinformatic approaches.
    De Santis P; Morosetti S; Scipioni A
    J Biomol Struct Dyn; 2010 Jun; 27(6):747-64. PubMed ID: 20232931
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Predicting nucleosome positioning in genomes: physical and bioinformatic approaches.
    Scipioni A; De Santis P
    Biophys Chem; 2011 May; 155(2-3):53-64. PubMed ID: 21482020
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Dual role of DNA intrinsic curvature and flexibility in determining nucleosome stability.
    Anselmi C; Bocchinfuso G; De Santis P; Savino M; Scipioni A
    J Mol Biol; 1999 Mar; 286(5):1293-301. PubMed ID: 10064697
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Re-cracking the nucleosome positioning code.
    Segal MR
    Stat Appl Genet Mol Biol; 2008; 7(1):Article14. PubMed ID: 18454729
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Genome-scale identification of nucleosome positions in S. cerevisiae.
    Yuan GC; Liu YJ; Dion MF; Slack MD; Wu LF; Altschuler SJ; Rando OJ
    Science; 2005 Jul; 309(5734):626-30. PubMed ID: 15961632
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Sequence-dependent nucleosome positioning.
    Chung HR; Vingron M
    J Mol Biol; 2009 Mar; 386(5):1411-22. PubMed ID: 19070622
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Nucleosome positioning and nucleosome stacking: two faces of the same coin.
    Riposo J; Mozziconacci J
    Mol Biosyst; 2012 Apr; 8(4):1172-8. PubMed ID: 22266567
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Long-range correlations between DNA bending sites: relation to the structure and dynamics of nucleosomes.
    Audit B; Vaillant C; Arneodo A; d'Aubenton-Carafa Y; Thermes C
    J Mol Biol; 2002 Mar; 316(4):903-18. PubMed ID: 11884131
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences.
    Thåström A; Lowary PT; Widlund HR; Cao H; Kubista M; Widom J
    J Mol Biol; 1999 Apr; 288(2):213-29. PubMed ID: 10329138
    [TBL] [Abstract][Full Text] [Related]  

  • 11. New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning.
    Lowary PT; Widom J
    J Mol Biol; 1998 Feb; 276(1):19-42. PubMed ID: 9514715
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.
    Albert I; Mavrich TN; Tomsho LP; Qi J; Zanton SJ; Schuster SC; Pugh BF
    Nature; 2007 Mar; 446(7135):572-6. PubMed ID: 17392789
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Predicting nucleosome positions in yeast: using the absolute frequency.
    Zhang Z; Zhang Y; Gutman I
    J Biomol Struct Dyn; 2012; 29(5):1081-8. PubMed ID: 22292961
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Modulation of cyclobutane pyrimidine dimer formation in a positioned nucleosome containing poly(dA.dT) tracts.
    Schieferstein U; Thoma F
    Biochemistry; 1996 Jun; 35(24):7705-14. PubMed ID: 8672471
    [TBL] [Abstract][Full Text] [Related]  

  • 15. AFM imaging and theoretical modeling studies of sequence-dependent nucleosome positioning.
    Pisano S; Pascucci E; Cacchione S; De Santis P; Savino M
    Biophys Chem; 2006 Nov; 124(2):81-9. PubMed ID: 16824667
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A theoretical model for the prediction of sequence-dependent nucleosome thermodynamic stability.
    Anselmi C; Bocchinfuso G; De Santis P; Savino M; Scipioni A
    Biophys J; 2000 Aug; 79(2):601-13. PubMed ID: 10919995
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Chromatin structure of the yeast URA3 gene at high resolution provides insight into structure and positioning of nucleosomes in the chromosomal context.
    Tanaka S; Livingstone-Zatchej M; Thoma F
    J Mol Biol; 1996 Apr; 257(5):919-34. PubMed ID: 8632475
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Active nucleosome positioning beyond intrinsic biophysics is revealed by in vitro reconstitution.
    Korber P
    Biochem Soc Trans; 2012 Apr; 40(2):377-82. PubMed ID: 22435815
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Evaluation of DNA intramolecular interactions for nucleosome positioning in yeast.
    Fernandez M; Fujii S; Kono H; Sarai A
    Genome Inform; 2009 Oct; 23(1):13-20. PubMed ID: 20180258
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Nucleosome positioning in relation to nucleosome spacing and DNA sequence-specific binding of a protein.
    Pusarla RH; Vinayachandran V; Bhargava P
    FEBS J; 2007 May; 274(9):2396-410. PubMed ID: 17419736
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.