These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

111 related articles for article (PubMed ID: 19615116)

  • 1. sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters.
    Casel P; Moreews F; Lagarrigue S; Klopp C
    BMC Proc; 2009 Jul; 3 Suppl 4(Suppl 4):S3. PubMed ID: 19615116
    [TBL] [Abstract][Full Text] [Related]  

  • 2. OligoRAP - an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity.
    Neerincx PB; Rauwerda H; Nie H; Groenen MA; Breit TM; Leunissen JA
    BMC Proc; 2009 Jul; 3 Suppl 4(Suppl 4):S4. PubMed ID: 19615117
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SigReannot-mart: a query environment for expression microarray probe re-annotations.
    Moreews F; Rauffet G; Dehais P; Klopp C
    Database (Oxford); 2011; 2011():bar025. PubMed ID: 21930501
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis.
    Neerincx PB; Casel P; Prickett D; Nie H; Watson M; Leunissen JA; Groenen MA; Klopp C
    BMC Proc; 2009 Jul; 3 Suppl 4(Suppl 4):S1. PubMed ID: 19615109
    [TBL] [Abstract][Full Text] [Related]  

  • 5. IMAD: flexible annotation of microarray sequences.
    Prickett D; Watson M
    BMC Proc; 2009 Jul; 3 Suppl 4(Suppl 4):S2. PubMed ID: 19615115
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Structural and functional-annotation of an equine whole genome oligoarray.
    Bright LA; Burgess SC; Chowdhary B; Swiderski CE; McCarthy FM
    BMC Bioinformatics; 2009 Oct; 10 Suppl 11(Suppl 11):S8. PubMed ID: 19811692
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.
    Risueño A; Fontanillo C; Dinger ME; De Las Rivas J
    BMC Bioinformatics; 2010 Apr; 11():221. PubMed ID: 20429936
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences.
    Trick M; Cheung F; Drou N; Fraser F; Lobenhofer EK; Hurban P; Magusin A; Town CD; Bancroft I
    BMC Plant Biol; 2009 May; 9():50. PubMed ID: 19426481
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Re-Annotator: Annotation Pipeline for Microarray Probe Sequences.
    Arloth J; Bader DM; Röh S; Altmann A
    PLoS One; 2015; 10(10):e0139516. PubMed ID: 26426330
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ArrayIDer: automated structural re-annotation pipeline for DNA microarrays.
    van den Berg BH; Konieczka JH; McCarthy FM; Burgess SC
    BMC Bioinformatics; 2009 Jan; 10():30. PubMed ID: 19166590
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Choice of transcripts and software has a large effect on variant annotation.
    McCarthy DJ; Humburg P; Kanapin A; Rivas MA; Gaulton K; Cazier JB; Donnelly P
    Genome Med; 2014; 6(3):26. PubMed ID: 24944579
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Transcript-specific expression profiles derived from sequence-based analysis of standard microarrays.
    Moll AG; Lindenmeyer MT; Kretzler M; Nelson PJ; Zimmer R; Cohen CD
    PLoS One; 2009; 4(3):e4702. PubMed ID: 19277110
    [TBL] [Abstract][Full Text] [Related]  

  • 13. mu-CS: an extension of the TM4 platform to manage Affymetrix binary data.
    Guzzi PH; Cannataro M
    BMC Bioinformatics; 2010 Jun; 11():315. PubMed ID: 20537149
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Oligodb--interactive design of oligo DNA for transcription profiling of human genes.
    Mrowka R; Schuchhardt J; Gille C
    Bioinformatics; 2002 Dec; 18(12):1686-7. PubMed ID: 12490455
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A high-quality annotated transcriptome of swine peripheral blood.
    Liu H; Smith TPL; Nonneman DJ; Dekkers JCM; Tuggle CK
    BMC Genomics; 2017 Jun; 18(1):479. PubMed ID: 28646867
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction.
    Frankish A; Uszczynska B; Ritchie GR; Gonzalez JM; Pervouchine D; Petryszak R; Mudge JM; Fonseca N; Brazma A; Guigo R; Harrow J
    BMC Genomics; 2015; 16 Suppl 8(Suppl 8):S2. PubMed ID: 26110515
    [TBL] [Abstract][Full Text] [Related]  

  • 17. GOAPhAR: An Integrative Discovery Tool for Annotation, Pathway Analysis.
    Mathur S; Visvanathan M; Svojanovsky S; Yoo B; Srinivas AB; Lushington GH; Smith PG
    Open Bioinforma J; 2009 Jan; 3():26-30. PubMed ID: 21132056
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ADGO: analysis of differentially expressed gene sets using composite GO annotation.
    Nam D; Kim SB; Kim SK; Yang S; Kim SY; Chu IS
    Bioinformatics; 2006 Sep; 22(18):2249-53. PubMed ID: 16837524
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ChipInfo: Software for extracting gene annotation and gene ontology information for microarray analysis.
    Zhong S; Li C; Wong WH
    Nucleic Acids Res; 2003 Jul; 31(13):3483-6. PubMed ID: 12824349
    [TBL] [Abstract][Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 6.