These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

206 related articles for article (PubMed ID: 19626713)

  • 1. Robustness and generalization of structure-based models for protein folding and function.
    Lammert H; Schug A; Onuchic JN
    Proteins; 2009 Dec; 77(4):881-91. PubMed ID: 19626713
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Geometrical features of the protein folding mechanism are a robust property of the energy landscape: a detailed investigation of several reduced models.
    Oliveira LC; Schug A; Onuchic JN
    J Phys Chem B; 2008 May; 112(19):6131-6. PubMed ID: 18251535
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Folding pathway dependence on energetic frustration and interaction heterogeneity for a three-dimensional hydrophobic protein model.
    Garcia LG; Araújo AF
    Proteins; 2006 Jan; 62(1):46-63. PubMed ID: 16292745
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Contact pair dynamics during folding of two small proteins: chicken villin head piece and the Alzheimer protein beta-amyloid.
    Mukherjee A; Bagchi B
    J Chem Phys; 2004 Jan; 120(3):1602-12. PubMed ID: 15268287
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Simulations of the protein folding process using topology-based models depend on the experimental structure.
    Prieto L; Rey A
    J Chem Phys; 2008 Sep; 129(11):115101. PubMed ID: 19044988
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The effect of increasing the stability of non-native interactions on the folding landscape of the bacterial immunity protein Im9.
    Morton VL; Friel CT; Allen LR; Paci E; Radford SE
    J Mol Biol; 2007 Aug; 371(2):554-68. PubMed ID: 17574573
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Modeling the interplay between geometrical and energetic effects in protein folding.
    Suzuki Y; Onuchic JN
    J Phys Chem B; 2005 Sep; 109(34):16503-10. PubMed ID: 16853098
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A physical reference state unifies the structure-derived potential of mean force for protein folding and binding.
    Liu S; Zhang C; Zhou H; Zhou Y
    Proteins; 2004 Jul; 56(1):93-101. PubMed ID: 15162489
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A knowledge-based move set for protein folding.
    Chen WW; Yang JS; Shakhnovich EI
    Proteins; 2007 Feb; 66(3):682-8. PubMed ID: 17143895
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Rough energy landscapes in protein folding: dimeric E. coli Trp repressor folds through three parallel channels.
    Gloss LM; Simler BR; Matthews CR
    J Mol Biol; 2001 Oct; 312(5):1121-34. PubMed ID: 11580254
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Topology-based potentials and the study of the competition between protein folding and aggregation.
    Prieto L; Rey A
    J Chem Phys; 2009 Mar; 130(11):115101. PubMed ID: 19317567
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambin.
    Kolinski A; Skolnick J
    Proteins; 1994 Apr; 18(4):353-66. PubMed ID: 8208727
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Mechanisms of protein assembly: lessons from minimalist models.
    Levy Y; Onuchic JN
    Acc Chem Res; 2006 Feb; 39(2):135-42. PubMed ID: 16489733
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Probing possible downhill folding: native contact topology likely places a significant constraint on the folding cooperativity of proteins with approximately 40 residues.
    Badasyan A; Liu Z; Chan HS
    J Mol Biol; 2008 Dec; 384(2):512-30. PubMed ID: 18823994
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Probing the free energy landscape of the FBP28WW domain using multiple techniques.
    Periole X; Allen LR; Tamiola K; Mark AE; Paci E
    J Comput Chem; 2009 May; 30(7):1059-68. PubMed ID: 18942730
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A survey of flexible protein binding mechanisms and their transition states using native topology based energy landscapes.
    Levy Y; Cho SS; Onuchic JN; Wolynes PG
    J Mol Biol; 2005 Mar; 346(4):1121-45. PubMed ID: 15701522
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Influence of Go-like interactions on global shapes of energy landscapes in beta-barrel forming model proteins: inherent structure analysis and statistical temperature molecular dynamics simulation.
    Kim J; Keyes T
    J Phys Chem B; 2008 Jan; 112(3):954-66. PubMed ID: 18088107
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model.
    Koga N; Takada S
    J Mol Biol; 2001 Oct; 313(1):171-80. PubMed ID: 11601854
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A lattice protein with an amyloidogenic latent state: stability and folding kinetics.
    Palyanov AY; Krivov SV; Karplus M; Chekmarev SF
    J Phys Chem B; 2007 Mar; 111(10):2675-87. PubMed ID: 17315918
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Identifying native-like protein structures using physics-based potentials.
    Dominy BN; Brooks CL
    J Comput Chem; 2002 Jan; 23(1):147-60. PubMed ID: 11913380
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.