BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

95 related articles for article (PubMed ID: 19628501)

  • 1. A new method for revealing correlated mutations under the structural and functional constraints in proteins.
    Lee BC; Kim D
    Bioinformatics; 2009 Oct; 25(19):2506-13. PubMed ID: 19628501
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Detection and reduction of evolutionary noise in correlated mutation analysis.
    Noivirt O; Eisenstein M; Horovitz A
    Protein Eng Des Sel; 2005 May; 18(5):247-53. PubMed ID: 15911538
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction.
    Dunn SD; Wahl LM; Gloor GB
    Bioinformatics; 2008 Feb; 24(3):333-40. PubMed ID: 18057019
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Protein structure alignment considering phenotypic plasticity.
    Csaba G; Birzele F; Zimmer R
    Bioinformatics; 2008 Aug; 24(16):i98-104. PubMed ID: 18689847
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.
    Wilson CA; Kreychman J; Gerstein M
    J Mol Biol; 2000 Mar; 297(1):233-49. PubMed ID: 10704319
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Entropy calculator: getting the best from your multiple protein alignments.
    Ramazzotti M; Degl'Innocenti D; Manao G; Ramponi G
    Ital J Biochem; 2004 Mar; 53(1):16-22. PubMed ID: 15356957
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Model-based prediction of sequence alignment quality.
    Ahola V; Aittokallio T; Vihinen M; Uusipaikka E
    Bioinformatics; 2008 Oct; 24(19):2165-71. PubMed ID: 18678587
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Combining evolutionary and structural information for local protein structure prediction.
    Pei J; Grishin NV
    Proteins; 2004 Sep; 56(4):782-94. PubMed ID: 15281130
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Structural clusters of evolutionary trace residues are statistically significant and common in proteins.
    Madabushi S; Yao H; Marsh M; Kristensen DM; Philippi A; Sowa ME; Lichtarge O
    J Mol Biol; 2002 Feb; 316(1):139-54. PubMed ID: 11829509
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The ConSurf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structures.
    Glaser F; Rosenberg Y; Kessel A; Pupko T; Ben-Tal N
    Proteins; 2005 Feb; 58(3):610-7. PubMed ID: 15614759
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Prediction of functionally important residues based solely on the computed energetics of protein structure.
    Elcock AH
    J Mol Biol; 2001 Sep; 312(4):885-96. PubMed ID: 11575940
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions.
    Gloor GB; Martin LC; Wahl LM; Dunn SD
    Biochemistry; 2005 May; 44(19):7156-65. PubMed ID: 15882054
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A robust method to detect structural and functional remote homologues.
    Shachar O; Linial M
    Proteins; 2004 Nov; 57(3):531-8. PubMed ID: 15382232
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Identification of homology in protein structure classification.
    Dietmann S; Holm L
    Nat Struct Biol; 2001 Nov; 8(11):953-7. PubMed ID: 11685241
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery.
    Davey NE; Shields DC; Edwards RJ
    Bioinformatics; 2009 Feb; 25(4):443-50. PubMed ID: 19136552
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Accurate prediction of stability changes in protein mutants by combining machine learning with structure based computational mutagenesis.
    Masso M; Vaisman II
    Bioinformatics; 2008 Sep; 24(18):2002-9. PubMed ID: 18632749
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Use of estimated evolutionary strength at the codon level improves the prediction of disease-related protein mutations in humans.
    Capriotti E; Arbiza L; Casadio R; Dopazo J; Dopazo H; Marti-Renom MA
    Hum Mutat; 2008 Jan; 29(1):198-204. PubMed ID: 17935148
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Using information theory to search for co-evolving residues in proteins.
    Martin LC; Gloor GB; Dunn SD; Wahl LM
    Bioinformatics; 2005 Nov; 21(22):4116-24. PubMed ID: 16159918
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Fast model-based protein homology detection without alignment.
    Hochreiter S; Heusel M; Obermayer K
    Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Identifying protein-protein interfacial residues in heterocomplexes using residue conservation scores.
    Li JJ; Huang DS; Wang B; Chen P
    Int J Biol Macromol; 2006 May; 38(3-5):241-7. PubMed ID: 16600360
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.