157 related articles for article (PubMed ID: 19640830)
1. Application of the Burrows-Wheeler Transform for searching for tandem repeats in DNA sequences.
Pokrzywa R
Int J Bioinform Res Appl; 2009; 5(4):432-46. PubMed ID: 19640830
[TBL] [Abstract][Full Text] [Related]
2. BWtrs: A tool for searching for tandem repeats in DNA sequences based on the Burrows-Wheeler transform.
Pokrzywa R; Polanski A
Genomics; 2010 Nov; 96(5):316-21. PubMed ID: 20709168
[TBL] [Abstract][Full Text] [Related]
3. DNA sequence compression using the burrows-wheeler transform.
Adjeroh D; Zhang Y; Mukherjee A; Powell M; Bell T
Proc IEEE Comput Soc Bioinform Conf; 2002; 1():303-13. PubMed ID: 15838146
[TBL] [Abstract][Full Text] [Related]
4. New method for yeast identification using Burrows-Wheeler transform.
Pokrzywa R
J Bioinform Comput Biol; 2008 Apr; 6(2):403-13. PubMed ID: 18464330
[TBL] [Abstract][Full Text] [Related]
5. Color-coding reveals tandem repeats in the Escherichia coli genome.
Yoshida T; Obata N; Oosawa K
J Mol Biol; 2000 May; 298(3):343-9. PubMed ID: 10772854
[TBL] [Abstract][Full Text] [Related]
6. Using GPUs for the exact alignment of short-read genetic sequences by means of the Burrows-Wheeler transform.
Salavert Torres J; Blanquer Espert I; Domínguez AT; Hernández García V; Medina Castelló I; Tárraga Giménez J; Dopazo Blázquez J
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(4):1245-56. PubMed ID: 22450827
[TBL] [Abstract][Full Text] [Related]
7. Quaternionic periodicity transform: an algebraic solution to the tandem repeat detection problem.
Brodzik AK
Bioinformatics; 2007 Mar; 23(6):694-700. PubMed ID: 17237057
[TBL] [Abstract][Full Text] [Related]
8. Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform.
Cox AJ; Bauer MJ; Jakobi T; Rosone G
Bioinformatics; 2012 Jun; 28(11):1415-9. PubMed ID: 22556365
[TBL] [Abstract][Full Text] [Related]
9. Finding approximate tandem repeats in genomic sequences.
Wexler Y; Yakhini Z; Kashi Y; Geiger D
J Comput Biol; 2005 Sep; 12(7):928-42. PubMed ID: 16201913
[TBL] [Abstract][Full Text] [Related]
10. Tandem repeats over the edit distance.
Sokol D; Benson G; Tojeira J
Bioinformatics; 2007 Jan; 23(2):e30-5. PubMed ID: 17237101
[TBL] [Abstract][Full Text] [Related]
11. Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences.
Mrázek J; Xie S
Bioinformatics; 2006 Dec; 22(24):3099-100. PubMed ID: 17095514
[TBL] [Abstract][Full Text] [Related]
12. Efficient maximal repeat finding using the burrows-wheeler transform and wavelet tree.
Külekci MO; Vitter JS; Xu B
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(2):421-9. PubMed ID: 21968959
[TBL] [Abstract][Full Text] [Related]
13. Parallel Computation of the Burrows-Wheeler Transform of Short Reads Using Prefix Parallelism.
Kimura K; Koike A
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(1):3-13. PubMed ID: 29994538
[TBL] [Abstract][Full Text] [Related]
14. Model of perfect tandem repeat with random pattern and empirical homogeneity testing poly-criteria for latent periodicity revelation in biological sequences.
Chaley M; Kutyrkin V
Math Biosci; 2008 Jan; 211(1):186-204. PubMed ID: 18062999
[TBL] [Abstract][Full Text] [Related]
15. Skittle: a 2-dimensional genome visualization tool.
Seaman JD; Sanford JC
BMC Bioinformatics; 2009 Dec; 10():452. PubMed ID: 20042093
[TBL] [Abstract][Full Text] [Related]
16. Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals.
Reneker J; Shyu CR
BMC Bioinformatics; 2005 May; 6():111. PubMed ID: 15869708
[TBL] [Abstract][Full Text] [Related]
17. Tandem repeats finder: a program to analyze DNA sequences.
Benson G
Nucleic Acids Res; 1999 Jan; 27(2):573-80. PubMed ID: 9862982
[TBL] [Abstract][Full Text] [Related]
18. Identification of microsatellites in DNA using adaptive S-transform.
Sharma SD; Saxena R; Sharma SN
IEEE J Biomed Health Inform; 2015 May; 19(3):1097-105. PubMed ID: 24951712
[TBL] [Abstract][Full Text] [Related]
19. Compression of Multiple DNA Sequences Using Intra-Sequence and Inter-Sequence Similarities.
Cheng KO; Wu P; Law NF; Siu WC
IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(6):1322-32. PubMed ID: 26671804
[TBL] [Abstract][Full Text] [Related]
20. Beyond tandem repeats: complex pattern structures and distant regions of similarity.
Hauth AM; Joseph DA
Bioinformatics; 2002; 18 Suppl 1():S31-7. PubMed ID: 12169528
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
