BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

95 related articles for article (PubMed ID: 19640832)

  • 1. Frameshift detection in prokaryotic genomic sequences.
    Kislyuk A; Lomsadze A; Lapidus AL; Borodovsky M
    Int J Bioinform Res Appl; 2009; 5(4):458-77. PubMed ID: 19640832
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genetack: frameshift identification in protein-coding sequences by the Viterbi algorithm.
    Antonov I; Borodovsky M
    J Bioinform Comput Biol; 2010 Jun; 8(3):535-51. PubMed ID: 20556861
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences.
    Antonov I; Baranov P; Borodovsky M
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D152-6. PubMed ID: 23161689
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons.
    Ranwez V; Harispe S; Delsuc F; Douzery EJ
    PLoS One; 2011; 6(9):e22594. PubMed ID: 21949676
    [TBL] [Abstract][Full Text] [Related]  

  • 5. FrameD: A flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences.
    Schiex T; Gouzy J; Moisan A; de Oliveira Y
    Nucleic Acids Res; 2003 Jul; 31(13):3738-41. PubMed ID: 12824407
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Frameshift alignment: statistics and post-genomic applications.
    Sheetlin SL; Park Y; Frith MC; Spouge JL
    Bioinformatics; 2014 Dec; 30(24):3575-82. PubMed ID: 25172925
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Search for potential reading frameshifts in cds from Arabidopsis thaliana and other genomes.
    Suvorova YM; Korotkova MA; Skryabin KG; Korotkov EV
    DNA Res; 2019 Apr; 26(2):157-170. PubMed ID: 30726896
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MetaGeneTack: ab initio detection of frameshifts in metagenomic sequences.
    Tang S; Antonov I; Borodovsky M
    Bioinformatics; 2013 Jan; 29(1):114-6. PubMed ID: 23129300
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CONSORF: a consensus prediction system for prokaryotic coding sequences.
    Kang S; Yang SJ; Kim S; Bhak J
    Bioinformatics; 2007 Nov; 23(22):3088-90. PubMed ID: 17977885
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A frameshift error detection algorithm for DNA sequencing projects.
    Fichant GA; Quentin Y
    Nucleic Acids Res; 1995 Aug; 23(15):2900-8. PubMed ID: 7659513
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Frame: detection of genomic sequencing errors.
    Brown NP; Sander C; Bork P
    Bioinformatics; 1998; 14(4):367-71. PubMed ID: 9632832
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ICDS database: interrupted CoDing sequences in prokaryotic genomes.
    Perrodou E; Deshayes C; Muller J; Schaeffer C; Van Dorsselaer A; Ripp R; Poch O; Reyrat JM; Lecompte O
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D338-43. PubMed ID: 16381882
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Amino acid translation program for full-length cDNA sequences with frameshift errors.
    Fukunishi Y; Hayashizaki Y
    Physiol Genomics; 2001 Mar; 5(2):81-7. PubMed ID: 11242592
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MetaGene: prokaryotic gene finding from environmental genome shotgun sequences.
    Noguchi H; Park J; Takagi T
    Nucleic Acids Res; 2006; 34(19):5623-30. PubMed ID: 17028096
    [TBL] [Abstract][Full Text] [Related]  

  • 15. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
    Zhang DL; Ji L; Li YD
    Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Detecting and analyzing DNA sequencing errors: toward a higher quality of the Bacillus subtilis genome sequence.
    Médigue C; Rose M; Viari A; Danchin A
    Genome Res; 1999 Nov; 9(11):1116-27. PubMed ID: 10568751
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Predicting genes expressed via -1 and +1 frameshifts.
    Moon S; Byun Y; Kim HJ; Jeong S; Han K
    Nucleic Acids Res; 2004; 32(16):4884-92. PubMed ID: 15371551
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Improve homology search sensitivity of PacBio data by correcting frameshifts.
    Du N; Sun Y
    Bioinformatics; 2016 Sep; 32(17):i529-i537. PubMed ID: 27587671
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?
    Deshayes C; Perrodou E; Gallien S; Euphrasie D; Schaeffer C; Van-Dorsselaer A; Poch O; Lecompte O; Reyrat JM
    Genome Biol; 2007; 8(2):R20. PubMed ID: 17295914
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes.
    Cruveiller S; Le Saux J; Vallenet D; Lajus A; Bocs S; Médigue C
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W471-9. PubMed ID: 15980515
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.