205 related articles for article (PubMed ID: 19642276)
1. Designing secondary structure profiles for fast ncRNA identification.
Sun Y; Buhler J
Comput Syst Bioinformatics Conf; 2008; 7():145-56. PubMed ID: 19642276
[TBL] [Abstract][Full Text] [Related]
2. Designing filters for fast-known NcRNA identification.
Sun Y; Buhler J; Yuan C
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(3):774-87. PubMed ID: 22084145
[TBL] [Abstract][Full Text] [Related]
3. A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements.
Zhang S; Borovok I; Aharonowitz Y; Sharan R; Bafna V
Bioinformatics; 2006 Jul; 22(14):e557-65. PubMed ID: 16873520
[TBL] [Abstract][Full Text] [Related]
4. Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy.
Weinberg Z; Ruzzo WL
Bioinformatics; 2004 Aug; 20 Suppl 1():i334-41. PubMed ID: 15262817
[TBL] [Abstract][Full Text] [Related]
5. Chain-RNA: a comparative ncRNA search tool based on the two-dimensional chain algorithm.
Lei J; Techa-Angkoon P; Sun Y
IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(2):274-85. PubMed ID: 23929857
[TBL] [Abstract][Full Text] [Related]
6. A local multiple alignment method for detection of non-coding RNA sequences.
Tabei Y; Asai K
Bioinformatics; 2009 Jun; 25(12):1498-505. PubMed ID: 19376823
[TBL] [Abstract][Full Text] [Related]
7. Structural alignment of pseudoknotted RNA.
Han B; Dost B; Bafna V; Zhang S
J Comput Biol; 2008 Jun; 15(5):489-504. PubMed ID: 18549303
[TBL] [Abstract][Full Text] [Related]
8. Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change.
Uzilov AV; Keegan JM; Mathews DH
BMC Bioinformatics; 2006 Mar; 7():173. PubMed ID: 16566836
[TBL] [Abstract][Full Text] [Related]
9. Structural alignment of RNA with triple helix structure.
Wong TK; Yiu SM
J Comput Biol; 2012 Apr; 19(4):365-78. PubMed ID: 22468707
[TBL] [Abstract][Full Text] [Related]
10. Sequence-based heuristics for faster annotation of non-coding RNA families.
Weinberg Z; Ruzzo WL
Bioinformatics; 2006 Jan; 22(1):35-9. PubMed ID: 16267089
[TBL] [Abstract][Full Text] [Related]
11. RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules.
Horesh Y; Doniger T; Michaeli S; Unger R
BMC Bioinformatics; 2007 Oct; 8():366. PubMed ID: 17908318
[TBL] [Abstract][Full Text] [Related]
12. Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%.
Havgaard JH; Lyngsø RB; Stormo GD; Gorodkin J
Bioinformatics; 2005 May; 21(9):1815-24. PubMed ID: 15657094
[TBL] [Abstract][Full Text] [Related]
13. Considerations in the identification of functional RNA structural elements in genomic alignments.
Babak T; Blencowe BJ; Hughes TR
BMC Bioinformatics; 2007 Jan; 8():33. PubMed ID: 17263882
[TBL] [Abstract][Full Text] [Related]
14. Discovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary Structures.
Fu Y; Xu ZZ; Lu ZJ; Zhao S; Mathews DH
PLoS One; 2015; 10(6):e0130200. PubMed ID: 26075601
[TBL] [Abstract][Full Text] [Related]
15. Customized strategies for discovering distant ncRNA homologs.
Mosig A; Zhu L; Stadler PF
Brief Funct Genomic Proteomic; 2009 Nov; 8(6):451-60. PubMed ID: 19779009
[TBL] [Abstract][Full Text] [Related]
16. MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.
Lindgreen S; Gardner PP; Krogh A
Bioinformatics; 2007 Dec; 23(24):3304-11. PubMed ID: 18006551
[TBL] [Abstract][Full Text] [Related]
17. An Ariadne's thread to the identification and annotation of noncoding RNAs in eukaryotes.
Soldà G; Makunin IV; Sezerman OU; Corradin A; Corti G; Guffanti A
Brief Bioinform; 2009 Sep; 10(5):475-89. PubMed ID: 19383843
[TBL] [Abstract][Full Text] [Related]
18. StemSearch: RNA search tool based on stem identification and indexing.
Milo N; Yogev S; Ziv-Ukelson M
Methods; 2014 Oct; 69(3):326-34. PubMed ID: 25009129
[TBL] [Abstract][Full Text] [Related]
19. FastR: fast database search tool for non-coding RNA.
Bafna V; Zhang S
Proc IEEE Comput Syst Bioinform Conf; 2004; ():52-61. PubMed ID: 16447999
[TBL] [Abstract][Full Text] [Related]
20. Biocomputational prediction of non-coding RNAs in model cyanobacteria.
Voss B; Georg J; Schön V; Ude S; Hess WR
BMC Genomics; 2009 Mar; 10():123. PubMed ID: 19309518
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]