BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

206 related articles for article (PubMed ID: 19679090)

  • 1. Protein-peptide interactions adopt the same structural motifs as monomeric protein folds.
    Vanhee P; Stricher F; Baeten L; Verschueren E; Lenaerts T; Serrano L; Rousseau F; Schymkowitz J
    Structure; 2009 Aug; 17(8):1128-36. PubMed ID: 19679090
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Interaction interfaces of protein domains are not topologically equivalent across families within superfamilies: Implications for metabolic and signaling pathways.
    Rekha N; Machado SM; Narayanan C; Krupa A; Srinivasan N
    Proteins; 2005 Feb; 58(2):339-53. PubMed ID: 15562516
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PIBASE: a comprehensive database of structurally defined protein interfaces.
    Davis FP; Sali A
    Bioinformatics; 2005 May; 21(9):1901-7. PubMed ID: 15657096
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Geometric similarities of protein-protein interfaces at atomic resolution are only observed within homologous families: an exhaustive structural classification study.
    Kinjo AR; Nakamura H
    J Mol Biol; 2010 Jun; 399(3):526-40. PubMed ID: 20417638
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Towards a structural classification of phosphate binding sites in protein-nucleotide complexes: an automated all-against-all structural comparison using geometric matching.
    Brakoulias A; Jackson RM
    Proteins; 2004 Aug; 56(2):250-60. PubMed ID: 15211509
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Equivalent binding sites reveal convergently evolved interaction motifs.
    Henschel A; Kim WK; Schroeder M
    Bioinformatics; 2006 Mar; 22(5):550-5. PubMed ID: 16287935
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Biologically enhanced sampling geometric docking and backbone flexibility treatment with multiconformational superposition.
    Ma XH; Li CH; Shen LZ; Gong XQ; Chen WZ; Wang CX
    Proteins; 2005 Aug; 60(2):319-23. PubMed ID: 15981260
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Predicting protein-peptide interactions via a network-based motif sampler.
    Reiss DJ; Schwikowski B
    Bioinformatics; 2004 Aug; 20 Suppl 1():i274-82. PubMed ID: 15262809
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Protein-protein interactions: a simple strategy to identify binding sites and peptide antagonists.
    Sandomenico A; Monti SM; Sabatella M; De Capua A; Tornatore L; Doti N; Viparelli F; Dathan NA; Pedone C; Ruvo M; Marasco D
    Chem Biol Drug Des; 2009 May; 73(5):483-93. PubMed ID: 19366357
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Structural classification of thioredoxin-like fold proteins.
    Qi Y; Grishin NV
    Proteins; 2005 Feb; 58(2):376-88. PubMed ID: 15558583
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction.
    Moult J
    Curr Opin Struct Biol; 2005 Jun; 15(3):285-9. PubMed ID: 15939584
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.
    Teyra J; Doms A; Schroeder M; Pisabarro MT
    BMC Bioinformatics; 2006 Mar; 7():104. PubMed ID: 16512892
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Sub-angstrom modeling of complexes between flexible peptides and globular proteins.
    Raveh B; London N; Schueler-Furman O
    Proteins; 2010 Jul; 78(9):2029-40. PubMed ID: 20455260
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Variable conformation and dynamics of calmodulin complexed with peptides derived from the autoinhibitory domains of target proteins.
    Yao Y; Squier TC
    Biochemistry; 1996 May; 35(21):6815-27. PubMed ID: 8639633
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale.
    Li H; Li J; Wong L
    Bioinformatics; 2006 Apr; 22(8):989-96. PubMed ID: 16446278
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Architecture of basic building blocks in protein and domain structural interaction networks.
    Moon HS; Bhak J; Lee KH; Lee D
    Bioinformatics; 2005 Apr; 21(8):1479-86. PubMed ID: 15613386
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Characterization by NMR and molecular modeling of the binding of polyisoprenols and polyisoprenyl recognition sequence peptides: 3D structure of the complexes reveals sites of specific interactions.
    Zhou GP; Troy FA
    Glycobiology; 2003 Feb; 13(2):51-71. PubMed ID: 12626407
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.
    Laurie AT; Jackson RM
    Bioinformatics; 2005 May; 21(9):1908-16. PubMed ID: 15701681
    [TBL] [Abstract][Full Text] [Related]  

  • 19. In silico grouping of peptide/HLA class I complexes using structural interaction characteristics.
    Tong JC; Tan TW; Ranganathan S
    Bioinformatics; 2007 Jan; 23(2):177-83. PubMed ID: 17090577
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Peptides mediating interaction networks: new leads at last.
    Neduva V; Russell RB
    Curr Opin Biotechnol; 2006 Oct; 17(5):465-71. PubMed ID: 16962311
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.