160 related articles for article (PubMed ID: 19689960)
1. WEbcoli: an interactive and asynchronous web application for in silico design and analysis of genome-scale E.coli model.
Jung TS; Yeo HC; Reddy SG; Cho WS; Lee DY
Bioinformatics; 2009 Nov; 25(21):2850-2. PubMed ID: 19689960
[TBL] [Abstract][Full Text] [Related]
2. Development of a software tool for in silico simulation of Escherichia coli using a visual programming environment.
Lee SG; Kim CM; Hwang KS
J Biotechnol; 2005 Sep; 119(1):87-92. PubMed ID: 15996785
[TBL] [Abstract][Full Text] [Related]
3. Characterizing Escherichia coli DH5alpha growth and metabolism in a complex medium using genome-scale flux analysis.
Selvarasu S; Ow DS; Lee SY; Lee MM; Oh SK; Karimi IA; Lee DY
Biotechnol Bioeng; 2009 Feb; 102(3):923-34. PubMed ID: 18853410
[TBL] [Abstract][Full Text] [Related]
4. coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics.
Chaudhuri RR; Khan AM; Pallen MJ
Nucleic Acids Res; 2004 Jan; 32(Database issue):D296-9. PubMed ID: 14681417
[TBL] [Abstract][Full Text] [Related]
5. MetaFluxNet, a program package for metabolic pathway construction and analysis, and its use in large-scale metabolic flux analysis of Escherichia coli.
Lee SY; Lee DY; Hong SH; Kim TY; Yun H; Oh YG; Park S
Genome Inform; 2003; 14():23-33. PubMed ID: 15706517
[TBL] [Abstract][Full Text] [Related]
6. Genome-scale in silico aided metabolic analysis and flux comparisons of Escherichia coli to improve succinate production.
Wang Q; Chen X; Yang Y; Zhao X
Appl Microbiol Biotechnol; 2006 Dec; 73(4):887-94. PubMed ID: 16927085
[TBL] [Abstract][Full Text] [Related]
7. ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis.
Pitkänen E; Akerlund A; Rantanen A; Jouhten P; Ukkonen E
J Integr Bioinform; 2008 Aug; 5(2):. PubMed ID: 20134058
[TBL] [Abstract][Full Text] [Related]
8. Pathway databases: a case study in computational symbolic theories.
Karp PD
Science; 2001 Sep; 293(5537):2040-4. PubMed ID: 11557880
[TBL] [Abstract][Full Text] [Related]
9. MaGe: a microbial genome annotation system supported by synteny results.
Vallenet D; Labarre L; Rouy Z; Barbe V; Bocs S; Cruveiller S; Lajus A; Pascal G; Scarpelli C; Médigue C
Nucleic Acids Res; 2006; 34(1):53-65. PubMed ID: 16407324
[TBL] [Abstract][Full Text] [Related]
10. Microbial genome analysis and comparisons: Web-based protocols and resources.
Bhagwat M; Bhagwat AA
Methods Mol Biol; 2011; 765():297-307. PubMed ID: 21815099
[TBL] [Abstract][Full Text] [Related]
11. The MicrobesOnline Web site for comparative genomics.
Alm EJ; Huang KH; Price MN; Koche RP; Keller K; Dubchak IL; Arkin AP
Genome Res; 2005 Jul; 15(7):1015-22. PubMed ID: 15998914
[TBL] [Abstract][Full Text] [Related]
12. FLOSYS--a web-accessible workflow system for protocol-driven biomolecular sequence analysis.
Badidi E; Lang BF; Burger G
Cell Mol Biol (Noisy-le-grand); 2004 Nov; 50(7):785-93. PubMed ID: 15672461
[TBL] [Abstract][Full Text] [Related]
13. BPhyOG: an interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes.
Luo Y; Fu C; Zhang DY; Lin K
BMC Bioinformatics; 2007 Jul; 8():266. PubMed ID: 17650344
[TBL] [Abstract][Full Text] [Related]
14. A general computational model for predicting ribosomal frameshifts in genome sequences.
Byun Y; Moon S; Han K
Comput Biol Med; 2007 Dec; 37(12):1796-801. PubMed ID: 17678640
[TBL] [Abstract][Full Text] [Related]
15. The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli.
Sundararaj S; Guo A; Habibi-Nazhad B; Rouani M; Stothard P; Ellison M; Wishart DS
Nucleic Acids Res; 2004 Jan; 32(Database issue):D293-5. PubMed ID: 14681416
[TBL] [Abstract][Full Text] [Related]
16. In silico metabolic pathway analysis and design: succinic acid production by metabolically engineered Escherichia coli as an example.
Lee SY; Hong SH; Moon SY
Genome Inform; 2002; 13():214-23. PubMed ID: 14571390
[TBL] [Abstract][Full Text] [Related]
17. MADAP, a flexible clustering tool for the interpretation of one-dimensional genome annotation data.
Schmid CD; Sengstag T; Bucher P; Delorenzi M
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W201-5. PubMed ID: 17526516
[TBL] [Abstract][Full Text] [Related]
18. methBLAST and methPrimerDB: web-tools for PCR based methylation analysis.
Pattyn F; Hoebeeck J; Robbrecht P; Michels E; De Paepe A; Bottu G; Coornaert D; Herzog R; Speleman F; Vandesompele J
BMC Bioinformatics; 2006 Nov; 7():496. PubMed ID: 17094804
[TBL] [Abstract][Full Text] [Related]
19. MODEL-molecular descriptor lab: a web-based server for computing structural and physicochemical features of compounds.
Li ZR; Han LY; Xue Y; Yap CW; Li H; Jiang L; Chen YZ
Biotechnol Bioeng; 2007 Jun; 97(2):389-96. PubMed ID: 17013940
[TBL] [Abstract][Full Text] [Related]
20. Software applications for flux balance analysis.
Lakshmanan M; Koh G; Chung BK; Lee DY
Brief Bioinform; 2014 Jan; 15(1):108-22. PubMed ID: 23131418
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
