282 related articles for article (PubMed ID: 19690563)
1. Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture.
Jothi R; Balaji S; Wuster A; Grochow JA; Gsponer J; Przytycka TM; Aravind L; Babu MM
Mol Syst Biol; 2009; 5():294. PubMed ID: 19690563
[TBL] [Abstract][Full Text] [Related]
2. Genomic analysis of the hierarchical structure of regulatory networks.
Yu H; Gerstein M
Proc Natl Acad Sci U S A; 2006 Oct; 103(40):14724-31. PubMed ID: 17003135
[TBL] [Abstract][Full Text] [Related]
3. Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression.
Boorsma A; Lu XJ; Zakrzewska A; Klis FM; Bussemaker HJ
PLoS One; 2008 Sep; 3(9):e3112. PubMed ID: 18769540
[TBL] [Abstract][Full Text] [Related]
4. Mapping functional transcription factor networks from gene expression data.
Haynes BC; Maier EJ; Kramer MH; Wang PI; Brown H; Brent MR
Genome Res; 2013 Aug; 23(8):1319-28. PubMed ID: 23636944
[TBL] [Abstract][Full Text] [Related]
5. High-resolution DNA-binding specificity analysis of yeast transcription factors.
Zhu C; Byers KJ; McCord RP; Shi Z; Berger MF; Newburger DE; Saulrieta K; Smith Z; Shah MV; Radhakrishnan M; Philippakis AA; Hu Y; De Masi F; Pacek M; Rolfs A; Murthy T; Labaer J; Bulyk ML
Genome Res; 2009 Apr; 19(4):556-66. PubMed ID: 19158363
[TBL] [Abstract][Full Text] [Related]
6. Improved recovery of cell-cycle gene expression in Saccharomyces cerevisiae from regulatory interactions in multiple omics data.
Panchy NL; Lloyd JP; Shiu SH
BMC Genomics; 2020 Feb; 21(1):159. PubMed ID: 32054475
[TBL] [Abstract][Full Text] [Related]
7. Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast.
Yang TH
BMC Bioinformatics; 2019 Dec; 20(Suppl 23):630. PubMed ID: 31881824
[TBL] [Abstract][Full Text] [Related]
8. Genomic analysis of regulatory network dynamics reveals large topological changes.
Luscombe NM; Babu MM; Yu H; Snyder M; Teichmann SA; Gerstein M
Nature; 2004 Sep; 431(7006):308-12. PubMed ID: 15372033
[TBL] [Abstract][Full Text] [Related]
9. Identifying cooperativity among transcription factors controlling the cell cycle in yeast.
Banerjee N; Zhang MQ
Nucleic Acids Res; 2003 Dec; 31(23):7024-31. PubMed ID: 14627835
[TBL] [Abstract][Full Text] [Related]
10. Controllability analysis of transcriptional regulatory networks reveals circular control patterns among transcription factors.
Ă–sterlund T; Bordel S; Nielsen J
Integr Biol (Camb); 2015 May; 7(5):560-8. PubMed ID: 25855217
[TBL] [Abstract][Full Text] [Related]
11. Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast.
Balaji S; Babu MM; Iyer LM; Luscombe NM; Aravind L
J Mol Biol; 2006 Jun; 360(1):213-27. PubMed ID: 16762362
[TBL] [Abstract][Full Text] [Related]
12. Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.
Zhang Y; Xuan J; de los Reyes BG; Clarke R; Ressom HW
BMC Bioinformatics; 2008 Apr; 9():203. PubMed ID: 18426580
[TBL] [Abstract][Full Text] [Related]
13. Identifying combinatorial regulation of transcription factors and binding motifs.
Kato M; Hata N; Banerjee N; Futcher B; Zhang MQ
Genome Biol; 2004; 5(8):R56. PubMed ID: 15287978
[TBL] [Abstract][Full Text] [Related]
14. Profiling the transcription factor regulatory networks of human cell types.
Zhang S; Tian D; Tran NH; Choi KP; Zhang L
Nucleic Acids Res; 2014 Nov; 42(20):12380-7. PubMed ID: 25300490
[TBL] [Abstract][Full Text] [Related]
15. Development of a novel oligonucleotide array-based transcription factor assay platform for genome-wide active transcription factor profiling in Saccharomyces cerevisiae.
Zhao Y; Shao W; Wei H; Qiao J; Lu Y; Sun Y; Mitchelson K; Cheng J; Zhou Y
J Proteome Res; 2008 Mar; 7(3):1315-25. PubMed ID: 18220337
[TBL] [Abstract][Full Text] [Related]
16. Quantifying transcriptional regulatory networks by integrating sequence features and microarray data.
Liu H
Bioprocess Biosyst Eng; 2010 May; 33(4):495-505. PubMed ID: 19657679
[TBL] [Abstract][Full Text] [Related]
17. Rapid reorganization of the transcriptional regulatory network after genome duplication in yeast.
Conant GC
Proc Biol Sci; 2010 Mar; 277(1683):869-76. PubMed ID: 19923128
[TBL] [Abstract][Full Text] [Related]
18. Inferring a transcriptional regulatory network of the cytokinesis-related genes by network component analysis.
Chen SF; Juang YL; Chou WK; Lai JM; Huang CY; Kao CY; Wang FS
BMC Syst Biol; 2009 Nov; 3():110. PubMed ID: 19943917
[TBL] [Abstract][Full Text] [Related]
19. Statistical methods for identifying yeast cell cycle transcription factors.
Tsai HK; Lu HH; Li WH
Proc Natl Acad Sci U S A; 2005 Sep; 102(38):13532-7. PubMed ID: 16157877
[TBL] [Abstract][Full Text] [Related]
20. Transcriptional regulatory networks in Saccharomyces cerevisiae.
Lee TI; Rinaldi NJ; Robert F; Odom DT; Bar-Joseph Z; Gerber GK; Hannett NM; Harbison CT; Thompson CM; Simon I; Zeitlinger J; Jennings EG; Murray HL; Gordon DB; Ren B; Wyrick JJ; Tagne JB; Volkert TL; Fraenkel E; Gifford DK; Young RA
Science; 2002 Oct; 298(5594):799-804. PubMed ID: 12399584
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]