These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
25. imputeqc: an R package for assessing imputation quality of genotypes and optimizing imputation parameters. Khvorykh GV; Khrunin AV BMC Bioinformatics; 2020 Jul; 21(Suppl 12):304. PubMed ID: 32703240 [TBL] [Abstract][Full Text] [Related]
26. APOE is not associated with Alzheimer disease: a cautionary tale of genotype imputation. Beecham GW; Martin ER; Gilbert JR; Haines JL; Pericak-Vance MA Ann Hum Genet; 2010 May; 74(3):189-94. PubMed ID: 20529013 [TBL] [Abstract][Full Text] [Related]
27. Haploview: Visualization and analysis of SNP genotype data. Barrett JC Cold Spring Harb Protoc; 2009 Oct; 2009(10):pdb.ip71. PubMed ID: 20147036 [TBL] [Abstract][Full Text] [Related]
28. FAPI: Fast and accurate P-value Imputation for genome-wide association study. Kwan JS; Li MX; Deng JE; Sham PC Eur J Hum Genet; 2016 May; 24(5):761-6. PubMed ID: 26306642 [TBL] [Abstract][Full Text] [Related]
29. Impact of reference population on accuracy of imputation from 6K to 50K single nucleotide polymorphism chips in purebred and crossbreed beef cattle. Ventura RV; Lu D; Schenkel FS; Wang Z; Li C; Miller SP J Anim Sci; 2014 Apr; 92(4):1433-44. PubMed ID: 24663187 [TBL] [Abstract][Full Text] [Related]
30. Genotype imputation in the domestic dog. Friedenberg SG; Meurs KM Mamm Genome; 2016 Oct; 27(9-10):485-94. PubMed ID: 27129452 [TBL] [Abstract][Full Text] [Related]
31. Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle. Rafter P; Gormley IC; Parnell AC; Kearney JF; Berry DP BMC Genomics; 2020 Mar; 21(1):205. PubMed ID: 32131735 [TBL] [Abstract][Full Text] [Related]
32. Single nucleotide polymorphism discovery in barley using autoSNPdb. Duran C; Appleby N; Vardy M; Imelfort M; Edwards D; Batley J Plant Biotechnol J; 2009 May; 7(4):326-33. PubMed ID: 19386041 [TBL] [Abstract][Full Text] [Related]
33. Accuracy of imputation of single nucleotide polymorphism marker genotypes from low-density panels in Japanese Black cattle. Ogawa S; Matsuda H; Taniguchi Y; Watanabe T; Takasuga A; Sugimoto Y; Iwaisaki H Anim Sci J; 2016 Jan; 87(1):3-12. PubMed ID: 26032028 [TBL] [Abstract][Full Text] [Related]
34. Whole genome SNP genotype piecemeal imputation. Wang Y; Wylie T; Stothard P; Lin G BMC Bioinformatics; 2015 Oct; 16():340. PubMed ID: 26498158 [TBL] [Abstract][Full Text] [Related]
36. LD2SNPing: linkage disequilibrium plotter and RFLP enzyme mining for tag SNPs. Chang HW; Chuang LY; Chang YJ; Cheng YH; Hung YC; Chen HC; Yang CH BMC Genet; 2009 Jun; 10():26. PubMed ID: 19500380 [TBL] [Abstract][Full Text] [Related]
37. Extending the use of GWAS data by combining data from different genetic platforms. van Iperen EP; Hovingh GK; Asselbergs FW; Zwinderman AH PLoS One; 2017; 12(2):e0172082. PubMed ID: 28245255 [TBL] [Abstract][Full Text] [Related]
38. Genotype Imputation from Large Reference Panels. Das S; Abecasis GR; Browning BL Annu Rev Genomics Hum Genet; 2018 Aug; 19():73-96. PubMed ID: 29799802 [TBL] [Abstract][Full Text] [Related]
39. Imputation of missing genotypes from low- to high-density SNP panel in different population designs. He S; Wang S; Fu W; Ding X; Zhang Q Anim Genet; 2015 Feb; 46(1):1-7. PubMed ID: 25431355 [TBL] [Abstract][Full Text] [Related]